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Gene

SMARCC1

SWI/SNF related BAF chromatin remodeling complex subunit C1

Summary

Cytogenetic location
3p21.31
Coordinates
Chromosome 3: 47,585,269–47,781,893 (GRCh38)
Exons
28 exons across 196.6 kb
Protein
1,105 amino acids
Also known as
BAF155, SRG3, Rsc8, CRACC1
MANE Select transcript
ENST00000254480.10NM_003074.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SMARCC1 yet. The test sequences your whole genome, so your data includes it all the same.

How SMARCC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 3, with a bracket where SMARCC1 sits. SMARCC1 and 9 genes near it on chromosome 3, from 47,183,581 to 48,183,580.Chromosome 33p21.31p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q2947.2 Mb47.4 Mb47.6 Mb47.8 Mb48 MbKIF9: 47,227,426–47,283,451, reverse strandKIF9KLHL18: 47,282,628–47,346,819, forward strandKLHL18PTPN23: 47,381,011–47,413,442, forward strandPTPN23SCAP: 47,413,681–47,477,126, reverse strandSCAPELP6: 47,490,710–47,513,738, reverse strandELP6CSPG5: 47,562,238–47,580,792, reverse strandCSPG5SMARCC1: 47,585,269–47,781,893, reverse strandSMARCC1DHX30: 47,802,641–47,851,617, forward strandDHX30MAP4: 47,850,678–48,089,299, reverse strandMAP4CDC25A: 48,157,146–48,188,428, reverse strandCDC25ADiagram of SMARCC1: 28 exons on the reverse strand of chromosome 3Exon 26: 1 known disease-causing siteExon 14: 1 known disease-causing siteExon 10: 1 known disease-causing siteExon 9: 1 known disease-causing siteExon 28: 47,585,269–47,588,306, 3,038 basesExon 27: 47,590,661–47,590,837, 177 basesExon 26: 47,610,066–47,610,327, 262 basesExon 25: 47,622,207–47,622,341, 135 basesExon 24: 47,635,190–47,635,344, 155 basesExon 23: 47,636,022–47,636,136, 115 basesExon 22: 47,638,725–47,638,780, 56 basesExon 21: 47,661,294–47,661,455, 162 basesExon 20: 47,662,334–47,662,592, 259 basesExon 19: 47,670,658–47,670,717, 60 basesExon 18: 47,675,475–47,675,588, 114 basesExon 17: 47,676,629–47,676,782, 154 basesExon 16: 47,678,198–47,678,311, 114 basesExon 15: 47,680,437–47,680,508, 72 basesExon 14: 47,686,049–47,686,170, 122 basesExon 13: 47,689,387–47,689,424, 38 basesExon 12: 47,693,241–47,693,300, 60 basesExon 11: 47,701,278–47,701,402, 125 basesExon 10: 47,706,409–47,706,530, 122 basesExon 9: 47,710,683–47,710,808, 126 basesExon 8: 47,714,415–47,714,490, 76 basesExon 7: 47,720,666–47,720,735, 70 basesExon 6: 47,729,025–47,729,094, 70 basesExon 5: 47,736,034–47,736,126, 93 basesExon 4: 47,738,029–47,738,110, 82 basesExon 3: 47,745,908–47,745,993, 86 basesExon 2: 47,772,817–47,772,936, 120 basesExon 1: 47,781,603–47,781,893, 291 bases2825201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.4 kb of the gene's 196.6 kb; 3,318 of those bases code for the protein.

How a genome test reads SMARCC1

4

positions in SMARCC1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 196.6 kb of SMARCC1, introns included, not only the 6.4 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SMARCC1 gene: SWI/SNF related BAF chromatin remodeling complex subunit C1. Retrieved 17 October 2026, from https://dantelabs.com/genes/smarcc1

Vancouver

Dante Labs. SMARCC1 gene: SWI/SNF related BAF chromatin remodeling complex subunit C1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/smarcc1

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