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Gene

SLC12A9

solute carrier family 12 member 9

Summary

Cytogenetic location
7q22.1
Coordinates
Chromosome 7: 100,852,713–100,867,010 (GRCh38)
Exons
14 exons across 14.3 kb
Protein
914 amino acids
Also known as
CIP1
MANE Select transcript
ENST00000354161.8NM_020246.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SLC12A9 yet. The test sequences your whole genome, so your data includes it all the same.

How SLC12A9 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 7, with a bracket where SLC12A9 sits. SLC12A9 and 42 genes near it on chromosome 7, from 100,359,862 to 101,359,861.Chromosome 77q22.1p22.3p22.2p22.1p21.3p21.2p21.1p15.3p15.2p15.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.21q11.22q11.23q21.11q21.12q21.13q21.2q21.3q22.1q22.2q22.3q31.1q31.2q31.31q31.32q31.33q32.1q32.2q32.3q33q34q35q36.1q36.2q36.3100.4 Mb100.6 Mb100.8 Mb101 Mb101.2 MbPILRB: 100,351,627–100,367,831, forward strandPILRBPILRA: 100,367,530–100,400,098, forward strand: 100,397,577–100,434,107, forward strandZCWPW1: 100,400,826–100,428,992, reverse strandMEPCE: 100,428,322–100,435,138, forward strandMEPCEPPP1R35: 100,435,261–100,436,546, reverse strandPPP1R35SPACDR: 100,456,620–100,464,277, reverse strandSPACDRTSC22D4: 100,466,508–100,479,257, reverse strandTSC22D4: 100,478,099–100,478,170, reverse strandNYAP1: 100,483,605–100,494,802, forward strandNYAP1AGFG2: 100,539,169–100,569,429, forward strandAGFG2SAP25: 100,572,228–100,573,916, reverse strandLRCH4: 100,574,011–100,586,236, reverse strandLRCH4FBXO24: 100,583,982–100,601,117, forward strandPCOLCE: 100,602,321–100,608,175, forward strandPCOLCEMOSPD3: 100,612,102–100,616,004, forward strandMOSPD3TFR2: 100,620,416–100,642,779, reverse strandTFR2ACTL6B: 100,643,097–100,656,458, reverse strandACTL6BGNB2: 100,673,477–100,679,174, forward strandGNB2GIGYF1: 100,679,505–100,694,481, reverse strandGIGYF1POP7: 100,695,902–100,708,628, forward strandPOP7EPO: 100,720,465–100,723,700, forward strandEPOZAN: 100,733,595–100,797,797, forward strandZANEPHB4: 100,802,563–100,827,584, reverse strandEPHB4SLC12A9: 100,852,713–100,867,010, forward strandSLC12A9TRIP6: 100,867,126–100,873,524, forward strandTRIP6SRRT: 100,875,065–100,888,664, forward strandSRRTUFSP1: 100,888,721–100,889,715, reverse strandUFSP1ACHE: 100,889,993–100,897,022, reverse strandMUC3A: 100,949,414–100,968,348, forward strandMUC3AMUC12: 100,969,431–101,018,940, forward strandMUC12MUC17: 101,020,072–101,058,859, forward strandMUC17TRIM56: 101,085,234–101,097,967, forward strandTRIM56SERPINE1: 101,122,158–101,139,263, forward strandSERPINE1AP1S1: 101,154,352–101,161,596, forward strandAP1S1VGF: 101,162,509–101,167,245, reverse strandVGFNAT16: 101,170,496–101,180,301, reverse strandNAT16MOGAT3: 101,195,007–101,201,088, reverse strandPLOD3: 101,205,977–101,219,968, reverse strandPLOD3ZNHIT1: 101,218,117–101,224,195, forward strandZNHIT1CLDN15: 101,232,092–101,238,820, reverse strandCLDN15FIS1: 101,239,458–101,252,321, reverse strandFIS1IFT22: 101,310,914–101,321,831, reverse strandIFT22Diagram of SLC12A9: 14 exons on the forward strand of chromosome 7Exon 1: 100,852,713–100,852,835, 123 basesExon 2: 100,854,156–100,854,378, 223 basesExon 3: 100,854,620–100,854,754, 135 basesExon 4: 100,855,706–100,855,837, 132 basesExon 5: 100,856,868–100,857,176, 309 basesExon 6: 100,858,835–100,858,942, 108 basesExon 7: 100,859,050–100,859,161, 112 basesExon 8: 100,859,885–100,860,042, 158 basesExon 9: 100,860,150–100,860,232, 83 basesExon 10: 100,861,138–100,861,262, 125 basesExon 11: 100,861,392–100,861,584, 193 basesExon 12: 100,861,737–100,861,911, 175 basesExon 13: 100,862,681–100,862,827, 147 basesExon 14: 100,865,719–100,867,010, 1,292 bases124681012145′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.3 kb of the gene's 14.3 kb; 2,745 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SLC12A9 gene: solute carrier family 12 member 9. Retrieved 17 October 2026, from https://dantelabs.com/genes/slc12a9

Vancouver

Dante Labs. SLC12A9 gene: solute carrier family 12 member 9 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/slc12a9

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