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Gene

SHROOM1

shroom family member 1

Summary

Cytogenetic location
5q31.1
Coordinates
Chromosome 5: 132,822,141–132,830,647 (GRCh38)
Exons
10 exons across 8.5 kb
Protein
852 amino acids
Also known as
APXL2, KIAA1960
MANE Select transcript
ENST00000378679.8NM_001172700.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SHROOM1 yet. The test sequences your whole genome, so your data includes it all the same.

How SHROOM1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 5, with a bracket where SHROOM1 sits. SHROOM1 and 19 genes near it on chromosome 5, from 132,326,394 to 133,326,393.Chromosome 55q31.1p15.33p15.32p15.31p15.2p15.1p14.3p14.2p14.1p13.3p13.2p13.1p12p11q11.1q11.2q12.1q12.2q12.3q13.1q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q31.1q31.2q31.3q32q33.1q33.2q33.3q34q35.1q35.2q35.3132.4 Mb132.6 Mb132.8 Mb133 Mb133.2 MbSLC22A4: 132,293,737–132,344,206, forward strandSLC22A4SLC22A5: 132,369,493–132,395,615, forward strandSLC22A5: 132,410,832–132,646,079, forward strandIRF1: 132,440,440–132,508,719, reverse strandIRF1IL5: 132,541,444–132,556,838, reverse strandIL5RAD50: 132,556,019–132,646,349, forward strandRAD50IL13: 132,656,263–132,661,110, forward strandIL13IL4: 132,673,986–132,682,678, forward strandIL4KIF3A: 132,688,806–132,737,638, reverse strandKIF3ACCNI2: 132,747,319–132,765,178, forward strandCCNI2SEPTIN8: 132,750,138–132,807,241, reverse strandSEPTIN8SOWAHA: 132,813,302–132,816,786, forward strandSOWAHASHROOM1: 132,822,141–132,830,647, reverse strandSHROOM1GDF9: 132,861,181–132,866,884, reverse strandGDF9UQCRQ: 132,866,623–132,868,847, forward strandUQCRQLEAP2: 132,873,444–132,899,343, forward strandLEAP2AFF4: 132,875,395–132,963,931, reverse strandAFF4ZCCHC10: 132,996,985–133,026,604, reverse strandZCCHC10HSPA4: 133,051,942–133,106,449, forward strandHSPA4FSTL4: 133,193,430–133,612,688, reverse strandFSTL4Diagram of SHROOM1: 10 exons on the reverse strand of chromosome 5Exon 10: 132,822,141–132,823,128, 988 basesExon 9: 132,823,250–132,823,522, 273 basesExon 8: 132,823,623–132,823,764, 142 basesExon 7: 132,823,850–132,824,419, 570 basesExon 6: 132,824,615–132,824,821, 207 basesExon 5: 132,825,018–132,825,073, 56 basesExon 4: 132,825,163–132,826,182, 1,020 basesExon 3: 132,826,277–132,826,587, 311 basesExon 2: 132,827,461–132,827,607, 147 basesExon 1: 132,830,594–132,830,647, 54 bases109876543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.8 kb of the gene's 8.5 kb; 2,559 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SHROOM1 gene: shroom family member 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/shroom1

Vancouver

Dante Labs. SHROOM1 gene: shroom family member 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/shroom1

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