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Gene

SCGN

secretagogin, EF-hand calcium binding protein

Summary

Cytogenetic location
6p22.2
Coordinates
Chromosome 6: 25,652,215–25,701,783 (GRCh38)
Exons
11 exons across 49.6 kb
Protein
276 amino acids
Also known as
SECRET, DJ501N12.8, SEGN, CALBL
MANE Select transcript
ENST00000377961.3NM_006998.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SCGN yet. The test sequences your whole genome, so your data includes it all the same.

How SCGN is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 6, with a bracket where SCGN sits. SCGN and 26 genes near it on chromosome 6, from 25,176,999 to 26,176,998.Chromosome 66p22.2p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q2725.2 Mb25.4 Mb25.6 Mb25.8 Mb26 MbCARMIL1: 25,279,062–25,620,537, forward strandCARMIL1: 25,652,210–25,738,044, forward strandSCGN: 25,652,215–25,701,783, forward strandSCGNH2AC1: 25,723,397–25,726,562, reverse strandH2AC1H2BC1: 25,726,777–25,727,345, forward strandH2BC1SLC17A4: 25,753,300–25,783,316, forward strandSLC17A4SLC17A1: 25,781,532–25,832,067, reverse strandSLC17A1SLC17A3: 25,833,066–25,882,478, reverse strandSLC17A3SLC17A2: 25,906,892–25,930,815, reverse strandSLC17A2TRIM38: 25,962,693–25,991,231, forward strandTRIM38H1-1: 26,017,032–26,017,787, reverse strandH1-1H3C1: 26,020,451–26,021,487, forward strandH3C1H4C1: 26,021,649–26,022,847, forward strandH4C1H4C2: 26,025,802–26,027,283, reverse strandH3C2: 26,028,850–26,032,102, reverse strandH2AC4: 26,033,092–26,033,618, reverse strandH2BC3: 26,042,771–26,043,713, reverse strandH3C3: 26,045,384–26,045,869, forward strandH1-2: 26,054,760–26,056,470, reverse strandH2BC4: 26,067,392–26,124,016, reverse strandH2BC4HFE: 26,087,226–26,098,343, forward strandHFEH4C3: 26,103,933–26,104,337, forward strandH4C3H1-6: 26,107,412–26,108,135, reverse strandH1-6H2AC6: 26,124,145–26,139,116, forward strandH1-4: 26,156,329–26,157,115, forward strandH1-4H2BC5: 26,158,122–26,171,349, forward strandH2BC5H2BC6: 26,172,059–26,184,655, forward strandH2BC6Diagram of SCGN: 11 exons on the forward strand of chromosome 6Exon 1: 25,652,215–25,652,485, 271 basesExon 2: 25,653,382–25,653,452, 71 basesExon 3: 25,661,552–25,661,644, 93 basesExon 4: 25,664,943–25,665,032, 90 basesExon 5: 25,669,511–25,669,567, 57 basesExon 6: 25,669,999–25,670,076, 78 basesExon 7: 25,681,951–25,682,006, 56 basesExon 8: 25,689,172–25,689,217, 46 basesExon 9: 25,689,473–25,689,532, 60 basesExon 10: 25,691,056–25,691,124, 69 basesExon 11: 25,701,207–25,701,783, 577 bases1246810115′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.5 kb of the gene's 49.6 kb; 831 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SCGN gene: secretagogin, EF-hand calcium binding protein. Retrieved 17 October 2026, from https://dantelabs.com/genes/scgn

Vancouver

Dante Labs. SCGN gene: secretagogin, EF-hand calcium binding protein [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/scgn

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