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Gene

H2AC1

H2A clustered histone 1

Summary

Cytogenetic location
6p22.2
Coordinates
Chromosome 6: 25,726,063–25,726,562 (GRCh38)
Exons
1 exon across 0.5 kb
Protein
131 amino acids
Also known as
bA317E16.2, H2AFR
Previous symbols
HIST1H2AA
MANE Select transcript
ENST00000297012.5NM_170745.3
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads H2AC1 yet. The test sequences your whole genome, so your data includes it all the same.

How H2AC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 6, with a bracket where H2AC1 sits. H2AC1 and 35 genes near it on chromosome 6, from 25,226,313 to 26,226,312.Chromosome 66p22.2p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q2725.4 Mb25.6 Mb25.8 Mb26 Mb26.2 MbCARMIL1: 25,279,062–25,620,537, forward strandCARMIL1SCGN: 25,652,201–25,701,792, forward strandSCGN: 25,652,210–25,738,044, forward strandH2AC1: 25,726,063–25,726,562, reverse strandH2AC1H2BC1: 25,726,777–25,727,345, forward strandH2BC1SLC17A4: 25,753,300–25,783,316, forward strandSLC17A4SLC17A1: 25,781,532–25,832,067, reverse strandSLC17A1SLC17A3: 25,833,066–25,882,478, reverse strandSLC17A3SLC17A2: 25,906,892–25,930,815, reverse strandSLC17A2TRIM38: 25,962,693–25,991,231, forward strandTRIM38H1-1: 26,017,032–26,017,787, reverse strandH1-1H3C1: 26,020,451–26,021,487, forward strandH3C1H4C1: 26,021,649–26,022,847, forward strandH4C1H4C2: 26,025,802–26,027,283, reverse strandH3C2: 26,028,850–26,032,102, reverse strandH2AC4: 26,033,092–26,033,618, reverse strandH2BC3: 26,042,771–26,043,713, reverse strandH3C3: 26,045,384–26,045,869, forward strandH1-2: 26,054,760–26,056,470, reverse strandH2BC4: 26,067,392–26,124,016, reverse strandH2BC4HFE: 26,087,226–26,098,343, forward strandHFEH4C3: 26,103,933–26,104,337, forward strandH4C3H1-6: 26,107,412–26,108,135, reverse strandH1-6H2AC6: 26,124,145–26,139,116, forward strandH1-4: 26,156,329–26,157,115, forward strandH1-4H2BC5: 26,158,122–26,171,349, forward strandH2BC5H2BC6: 26,172,059–26,184,655, forward strandH2BC6H4C4: 26,188,710–26,189,112, reverse strandH4C4H3C4: 26,195,164–26,197,286, reverse strand: 26,195,595–26,199,293, reverse strandH2AC7: 26,198,784–26,199,293, reverse strandH2BC7: 26,199,516–26,199,988, forward strandH4C5: 26,204,610–26,205,021, forward strandH2BC8: 26,214,570–26,217,252, reverse strandH2AC8: 26,216,921–26,218,515, forward strandH3C6: 26,224,179–26,227,476, forward strandDiagram of H2AC1: one exon on the reverse strand of chromosome 6Exon 1: 25,726,063–25,726,562, 500 bases15′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 0.5 kb of the gene's 0.5 kb; 396 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). H2AC1 gene: H2A clustered histone 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/h2ac1

Vancouver

Dante Labs. H2AC1 gene: H2A clustered histone 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/h2ac1

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