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Gene

PHF3

PHD finger protein 3

Summary

Cytogenetic location
6q12
Coordinates
Chromosome 6: 63,635,802–63,726,011 (GRCh38)
Exons
16 exons across 90.2 kb
Protein
2,039 amino acids
MANE Select transcript
ENST00000262043.8NM_001370348.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PHF3 yet. The test sequences your whole genome, so your data includes it all the same.

How PHF3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 6, with a bracket where PHF3 sits. PHF3 and 5 genes near it on chromosome 6, from 63,180,907 to 64,180,906.Chromosome 66q12p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q2763.2 Mb63.4 Mb63.6 Mb63.8 Mb64 MbFKBP1C: 63,211,469–63,213,027, forward strandFKBP1CLGSN: 63,275,951–63,321,823, reverse strandLGSNPTP4A1: 63,521,696–63,583,588, forward strandPTP4A1: 63,572,002–63,583,588, forward strandPHF3: 63,635,802–63,726,011, forward strandPHF3EYS: 63,719,847–65,707,226, reverse strandEYSDiagram of PHF3: 16 exons on the forward strand of chromosome 6Exon 16: 2 known disease-causing sitesExon 1: 63,635,802–63,636,150, 349 basesExon 2: 63,646,527–63,646,795, 269 basesExon 3: 63,680,000–63,680,161, 162 basesExon 4: 63,684,129–63,685,911, 1,783 basesExon 5: 63,691,737–63,692,043, 307 basesExon 6: 63,694,581–63,694,764, 184 basesExon 7: 63,698,223–63,698,367, 145 basesExon 8: 63,698,449–63,698,605, 157 basesExon 9: 63,700,350–63,700,466, 117 basesExon 10: 63,702,508–63,702,639, 132 basesExon 11: 63,703,536–63,703,671, 136 basesExon 12: 63,706,029–63,706,224, 196 basesExon 13: 63,706,729–63,706,876, 148 basesExon 14: 63,709,151–63,709,240, 90 basesExon 15: 63,711,167–63,711,362, 196 basesExon 16: 63,711,586–63,726,011, 14,426 bases12468101214165′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 18.8 kb of the gene's 90.2 kb; 6,120 of those bases code for the protein.

How a genome test reads PHF3

2

positions in PHF3 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 90.2 kb of PHF3, introns included, not only the 18.8 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). PHF3 gene: PHD finger protein 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/phf3

Vancouver

Dante Labs. PHF3 gene: PHD finger protein 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/phf3

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