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Gene

NT5DC1

5'-nucleotidase domain containing 1

Summary

Cytogenetic location
6q22.1
Coordinates
Chromosome 6: 116,100,853–116,249,497 (GRCh38)
Exons
12 exons across 148.6 kb
Protein
455 amino acids
Also known as
dJ486I3.1, MGC24302
Previous symbols
NT5C2L1
MANE Select transcript
ENST00000319550.9NM_152729.3
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads NT5DC1 yet. The test sequences your whole genome, so your data includes it all the same.

How NT5DC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 6, with a bracket where NT5DC1 sits. NT5DC1 and 13 genes near it on chromosome 6, from 115,675,175 to 116,675,174.Chromosome 66q22.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q27115.8 Mb116 Mb116.2 Mb116.4 Mb116.6 MbFRK: 115,931,149–116,061,093, reverse strandFRKNT5DC1: 116,100,853–116,249,497, forward strandNT5DC1COL10A1: 116,118,909–116,158,747, reverse strandCOL10A1TSPYL4: 116,249,964–116,254,075, reverse strandTSPYL4DSE: 116,253,604–116,444,861, forward strandDSETSPYL1: 116,267,760–116,279,930, reverse strandTSPYL1: 116,399,395–116,463,696, forward strandCALHM6: 116,461,365–116,466,082, forward strandCALHM6TRAPPC3L: 116,494,989–116,545,684, reverse strandTRAPPC3LCALHM5: 116,511,604–116,524,788, forward strandCALHM5CALHM4: 116,529,013–116,561,127, forward strandCALHM4RWDD1: 116,571,386–116,598,204, forward strandRWDD1RSPH4A: 116,616,474–116,634,765, forward strandRSPH4AZUP1: 116,635,616–116,668,816, reverse strandZUP1Diagram of NT5DC1: 12 exons on the forward strand of chromosome 6Exon 1: 116,100,853–116,101,023, 171 basesExon 2: 116,106,244–116,106,335, 92 basesExon 3: 116,108,364–116,108,435, 72 basesExon 4: 116,110,850–116,110,956, 107 basesExon 5: 116,115,691–116,115,770, 80 basesExon 6: 116,117,861–116,117,945, 85 basesExon 7: 116,221,054–116,221,228, 175 basesExon 8: 116,223,034–116,223,131, 98 basesExon 9: 116,236,966–116,237,084, 119 basesExon 10: 116,238,187–116,238,348, 162 basesExon 11: 116,238,955–116,239,123, 169 basesExon 12: 116,243,909–116,249,497, 5,589 bases1246810125′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.9 kb of the gene's 148.6 kb; 1,368 of those bases code for the protein.

Sequencing NT5DC1

1

position in NT5DC1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 148.6 kb of NT5DC1, introns included, not only the 6.9 kb of exons.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.17-8666dff2.

Cite this page

APA

Dante Labs. (n.d.). NT5DC1 gene: 5'-nucleotidase domain containing 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/nt5dc1

Vancouver

Dante Labs. NT5DC1 gene: 5'-nucleotidase domain containing 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/nt5dc1

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