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Gene

LBX1

ladybird homeobox 1

Summary

Cytogenetic location
10q24.32
Coordinates
Chromosome 10: 101,226,994–101,229,463 (GRCh38)
Exons
2 exons across 2.5 kb
Protein
281 amino acids
Also known as
LBX1H, HPX6
MANE Select transcript
ENST00000370193.4NM_006562.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads LBX1 yet. The test sequences your whole genome, so your data includes it all the same.

How LBX1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome 10, with a bracket where LBX1 sits. LBX1 and 14 genes near it on chromosome 10, from 100,728,229 to 101,728,228.Chromosome 1010q24.32p15.3p15.2p15.1p14p13p12.33p12.32p12.31p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.31q23.32q23.33q24.1q24.2q24.31q24.32q24.33q25.1q25.2q25.3q26.11q26.12q26.13q26.2q26.3100.8 Mb101 Mb101.2 Mb101.4 Mb101.6 MbPAX2: 100,735,380–100,829,944, forward strandPAX2SLF2: 100,912,963–100,965,134, forward strandSLF2MRPL43: 100,968,131–100,990,450, reverse strandMRPL43SEMA4G: 100,969,493–100,985,871, forward strandTWNK: 100,987,367–100,994,403, forward strandTWNKLZTS2: 100,996,539–101,007,852, forward strandLZTS2PDZD7: 101,007,679–101,032,295, reverse strandPDZD7SFXN3: 101,031,229–101,041,244, forward strandSFXN3KAZALD1: 101,061,108–101,068,648, forward strandKAZALD1TLX1: 101,131,011–101,137,789, forward strandTLX1LBX1: 101,226,994–101,229,463, reverse strandLBX1BTRC: 101,354,030–101,557,324, forward strandBTRCDPCD: 101,570,560–101,609,667, forward strandDPCDPOLL: 101,576,051–101,588,273, reverse strandPOLLFBXW4: 101,610,663–101,695,298, reverse strandFBXW4Diagram of LBX1: 2 exons on the reverse strand of chromosome 10Exon 2: 1 known disease-causing siteExon 2: 101,226,994–101,227,790, 797 basesExon 1: 101,228,491–101,229,463, 973 bases215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.8 kb of the gene's 2.5 kb; 846 of those bases code for the protein.

How a genome test reads LBX1

1

position in LBX1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 2.5 kb of LBX1, introns included, not only the 1.8 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). LBX1 gene: ladybird homeobox 1. Retrieved 16 October 2026, from https://dantelabs.com/genes/lbx1

Vancouver

Dante Labs. LBX1 gene: ladybird homeobox 1 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/lbx1

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