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Gene

CNOT9

CCR4-NOT transcription complex subunit 9

Summary

Cytogenetic location
2q35
Coordinates
Chromosome 2: 218,568,839–218,597,080 (GRCh38)
Exons
8 exons across 28.2 kb
Protein
299 amino acids
Also known as
RCD1, RCD1+, CT129, CAF40
Previous symbols
RQCD1
MANE Select transcript
ENST00000273064.11NM_005444.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CNOT9 yet. The test sequences your whole genome, so your data includes it all the same.

How CNOT9 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where CNOT9 sits. CNOT9 and 30 genes near it on chromosome 2, from 218,082,960 to 219,082,959.Chromosome 22q35p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.3218.2 Mb218.4 Mb218.6 Mb218.8 Mb219 MbRUFY4: 218,034,960–218,090,649, forward strandRUFY4CXCR2: 218,125,269–218,137,251, forward strandCXCR2CXCR1: 218,162,841–218,166,969, reverse strandCXCR1ARPC2: 218,216,630–218,254,356, forward strandARPC2GPBAR1: 218,259,496–218,263,861, forward strandGPBAR1AAMP: 218,264,125–218,270,889, reverse strandAAMPPNKD: 218,269,651–218,347,057, forward strandPNKDTMBIM1: 218,274,193–218,292,589, reverse strandTMBIM1CATIP: 218,356,838–218,369,962, forward strandCATIPSLC11A1: 218,382,006–218,396,906, forward strandSLC11A1CTDSP1: 218,397,136–218,405,942, forward strandCTDSP1VIL1: 218,419,083–218,453,295, forward strandVIL1USP37: 218,450,251–218,568,768, reverse strandUSP37CNOT9: 218,568,839–218,597,080, forward strandCNOT9PLCD4: 218,607,855–218,637,186, forward strandPLCD4ZNF142: 218,633,329–218,659,655, reverse strandZNF142BCS1L: 218,658,764–218,668,759, forward strandBCS1LRNF25: 218,662,081–218,672,009, reverse strandRNF25STK36: 218,672,027–218,702,717, forward strandSTK36TTLL4: 218,710,773–218,759,724, forward strandTTLL4CYP27A1: 218,781,688–218,825,335, forward strandCYP27A1PRKAG3: 218,819,050–218,832,086, reverse strandPRKAG3WNT6: 218,859,795–218,874,233, forward strandWNT6WNT10A: 218,880,852–218,899,581, forward strandWNT10ACDK5R2: 218,959,666–218,962,155, forward strandCDK5R2FEV: 218,981,087–218,985,566, reverse strandFEVCRYBA2: 218,990,189–218,994,270, reverse strandCRYBA2CFAP65: 219,002,846–219,041,527, reverse strandCFAP65IHH: 219,054,424–219,061,064, reverse strandIHHNHEJ1: 219,069,355–219,160,869, reverse strandNHEJ1: 219,075,329–219,170,827, reverse strandDiagram of CNOT9: 8 exons on the forward strand of chromosome 2Exon 1: 218,568,839–218,568,978, 140 basesExon 2: 218,580,561–218,580,740, 180 basesExon 3: 218,582,971–218,583,086, 116 basesExon 4: 218,584,612–218,584,721, 110 basesExon 5: 218,587,586–218,587,695, 110 basesExon 6: 218,592,304–218,592,402, 99 basesExon 7: 218,592,616–218,592,707, 92 basesExon 8: 218,594,108–218,597,080, 2,973 bases124685′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.8 kb of the gene's 28.2 kb; 900 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CNOT9 gene: CCR4-NOT transcription complex subunit 9. Retrieved 16 October 2026, from https://dantelabs.com/genes/cnot9

Vancouver

Dante Labs. CNOT9 gene: CCR4-NOT transcription complex subunit 9 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/cnot9

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