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Gene

VRK3

VRK serine/threonine kinase 3

Summary

Cytogenetic location
19q13.33
Coordinates
Chromosome 19: 49,976,468–50,025,372 (GRCh38)
Exons
15 exons across 48.9 kb
Protein
474 amino acids
MANE Select transcript
ENST00000316763.8NM_016440.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VRK3 yet. The test sequences your whole genome, so your data includes it all the same.

How VRK3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where VRK3 sits. VRK3 and 38 genes near it on chromosome 19, from 49,500,920 to 50,500,919.Chromosome 1919q13.33p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4349.6 Mb49.8 Mb50 Mb50.2 Mb50.4 MbFCGRT: 49,506,806–49,526,917, forward strandFCGRTRCN3: 49,526,534–49,579,703, forward strandRCN3NOSIP: 49,555,207–49,592,927, reverse strandNOSIPPRRG2: 49,580,646–49,591,004, forward strandPRRG2PRR12: 49,591,108–49,626,439, forward strandPRR12RRAS: 49,634,555–49,640,211, reverse strandRRASSCAF1: 49,640,488–49,658,649, forward strandIRF3: 49,659,569–49,665,864, reverse strandBCL2L12: 49,664,622–49,673,917, forward strandBCL2L12PRMT1: 49,675,786–49,689,029, forward strandPRMT1ADM5: 49,688,953–49,690,575, forward strandADM5CPT1C: 49,690,898–49,713,733, forward strandCPT1CTSKS: 49,739,753–49,763,329, reverse strandTSKSAP2A1: 49,766,912–49,807,114, forward strandAP2A1FUZ: 49,806,866–49,817,376, reverse strandFUZMED25: 49,818,269–49,840,384, forward strandMED25PTOV1: 49,850,735–49,860,744, forward strandPTOV1PNKP: 49,859,882–49,878,351, reverse strandPNKPAKT1S1: 49,869,023–49,879,470, reverse strandAKT1S1TBC1D17: 49,877,501–49,888,751, forward strandIL4I1: 49,889,654–49,929,926, reverse strandNUP62: 49,906,825–49,929,926, reverse strand: 49,909,501–49,958,391, reverse strandATF5: 49,923,910–49,933,935, forward strandATF5SIGLEC11: 49,948,910–49,961,172, reverse strandSIGLEC11SIGLEC16: 49,969,600–49,975,819, forward strandSIGLEC16VRK3: 49,976,468–50,025,372, reverse strandVRK3ZNF473: 50,025,714–50,053,414, forward strandZNF473IZUMO2: 50,152,537–50,163,281, reverse strandIZUMO2MYH14: 50,188,181–50,310,545, forward strandMYH14KCNC3: 50,311,937–50,333,515, reverse strandKCNC3NR1H2: 50,329,639–50,383,404, forward strandNR1H2NAPSA: 50,358,472–50,369,342, reverse strandNAPSAPOLD1: 50,384,204–50,418,018, forward strandPOLD1: 50,415,799–50,428,409, forward strandSPIB: 50,418,931–50,431,314, forward strandSPIBMYBPC2: 50,432,772–50,466,328, forward strandMYBPC2GARIN5A: 50,466,785–50,476,866, reverse strandGARIN5AEMC10: 50,476,400–50,510,789, forward strandEMC10Diagram of VRK3: 15 exons on the reverse strand of chromosome 19Exon 15: 49,976,468–49,976,784, 317 basesExon 14: 49,979,083–49,979,242, 160 basesExon 13: 49,980,955–49,981,013, 59 basesExon 12: 49,988,372–49,988,492, 121 basesExon 11: 49,989,639–49,989,771, 133 basesExon 10: 49,992,860–49,992,952, 93 basesExon 9: 49,994,814–49,994,919, 106 basesExon 8: 49,995,191–49,995,275, 85 basesExon 7: 49,997,504–49,997,570, 67 basesExon 6: 50,000,790–50,000,854, 65 basesExon 5: 50,007,569–50,007,826, 258 basesExon 4: 50,009,236–50,009,385, 150 basesExon 3: 50,016,024–50,016,163, 140 basesExon 2: 50,020,585–50,020,647, 63 basesExon 1: 50,025,267–50,025,372, 106 bases15141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.9 kb of the gene's 48.9 kb; 1,425 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). VRK3 gene: VRK serine/threonine kinase 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/vrk3

Vancouver

Dante Labs. VRK3 gene: VRK serine/threonine kinase 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/vrk3

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