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Gene

VPS54

VPS54 subunit of GARP complex

Summary

Cytogenetic location
2p15-p14
Coordinates
Chromosome 2: 63,892,150–64,019,428 (GRCh38)
Exons
23 exons across 127.3 kb
Protein
977 amino acids
Also known as
HCC8, PPP1R164
MANE Select transcript
ENST00000272322.9NM_016516.3
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VPS54 yet. The test sequences your whole genome, so your data includes it all the same.

How VPS54 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where VPS54 sits. VPS54 and 5 genes near it on chromosome 2, from 63,455,789 to 64,455,788.Chromosome 22p15-p14p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.363.6 Mb63.8 Mb64 Mb64.2 Mb64.4 MbWDPCP: 63,119,559–63,827,843, reverse strandWDPCPMDH1: 63,588,557–63,607,273, forward strandMDH1UGP2: 63,840,945–63,951,431, forward strandUGP2VPS54: 63,892,150–64,019,428, reverse strandVPS54PELI1: 64,092,543–64,144,473, reverse strandPELI1LGALSL: 64,453,448–64,461,382, forward strandLGALSLDiagram of VPS54: 23 exons on the reverse strand of chromosome 2Exon 23: 63,892,150–63,893,535, 1,386 basesExon 22: 63,897,496–63,897,590, 95 basesExon 21: 63,899,474–63,899,581, 108 basesExon 20: 63,912,345–63,912,425, 81 basesExon 19: 63,912,540–63,912,661, 122 basesExon 18: 63,913,223–63,913,310, 88 basesExon 17: 63,914,182–63,914,287, 106 basesExon 16: 63,916,900–63,916,963, 64 basesExon 15: 63,919,883–63,919,995, 113 basesExon 14: 63,920,446–63,920,627, 182 basesExon 13: 63,921,206–63,921,335, 130 basesExon 12: 63,933,673–63,934,013, 341 basesExon 11: 63,942,465–63,942,561, 97 basesExon 10: 63,944,600–63,944,655, 56 basesExon 9: 63,947,383–63,947,490, 108 basesExon 8: 63,949,037–63,949,163, 127 basesExon 7: 63,962,058–63,962,443, 386 basesExon 6: 63,965,835–63,965,966, 132 basesExon 5: 63,968,957–63,968,991, 35 basesExon 4: 63,972,166–63,972,244, 79 basesExon 3: 63,981,646–63,981,887, 242 basesExon 2: 63,983,864–63,984,019, 156 basesExon 1: 64,018,938–64,019,428, 491 bases23201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.7 kb of the gene's 127.3 kb; 2,934 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). VPS54 gene: VPS54 subunit of GARP complex. Retrieved 17 October 2026, from https://dantelabs.com/genes/vps54

Vancouver

Dante Labs. VPS54 gene: VPS54 subunit of GARP complex [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/vps54

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