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Gene

VBP1

VHL binding protein 1

Summary

Cytogenetic location
Xq28
Coordinates
Chromosome X: 155,216,460–155,239,841 (GRCh38)
Exons
6 exons across 23.4 kb
Protein
197 amino acids
Also known as
PFD3, PFDN3
MANE Select transcript
ENST00000286428.7NM_003372.7
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VBP1 yet. The test sequences your whole genome, so your data includes it all the same.

How VBP1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome X, with a bracket where VBP1 sits. VBP1 and 20 genes near it on chromosome X, from 154,728,151 to 155,728,150.Chromosome XXq28p22.33p22.32p22.31p22.2p22.13p22.12p22.11p21.3p21.2p21.1p11.4p11.3p11.23p11.22p11.21p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.31q21.32q21.33q22.1q22.2q22.3q23q24q25q26.1q26.2q26.3q27.1q27.2q27.3q28154.8 Mb155 Mb155.2 Mb155.4 Mb155.6 MbGAB3: 154,675,249–154,751,583, reverse strandGAB3DKC1: 154,762,741–154,777,697, forward strandDKC1MPP1: 154,778,684–154,821,039, reverse strandMPP1SMIM9: 154,823,348–154,834,662, reverse strandSMIM9F8: 154,835,788–155,026,940, reverse strandF8H2AB1: 154,884,972–154,885,558, forward strandH2AB1F8A1: 154,886,355–154,888,061, forward strandF8A1FUNDC2: 155,025,980–155,065,641, forward strandCMC4: 155,060,021–155,071,303, reverse strandCMC4: 155,061,622–155,065,519, reverse strandMTCP1: 155,064,034–155,147,937, reverse strandMTCP1BRCC3: 155,071,416–155,128,969, forward strandBRCC3VBP1: 155,216,460–155,239,841, forward strandVBP1RAB39B: 155,258,235–155,264,531, reverse strandRAB39BCLIC2: 155,272,944–155,334,824, reverse strandCLIC2H2AB2: 155,380,709–155,381,299, forward strandH2AB2F8A2: 155,382,095–155,383,801, forward strandF8A2TMLHE: 155,414,745–155,719,107, reverse strandTMLHEF8A3: 155,456,914–155,458,620, reverse strandF8A3H2AB3: 155,459,415–155,460,005, reverse strandH2AB3SPRY3: 155,612,298–155,782,459, forward strandSPRY3Diagram of VBP1: 6 exons on the forward strand of chromosome XExon 1: 155,216,460–155,216,575, 116 basesExon 2: 155,220,183–155,220,307, 125 basesExon 3: 155,227,235–155,227,301, 67 basesExon 4: 155,228,384–155,228,482, 99 basesExon 5: 155,236,229–155,236,367, 139 basesExon 6: 155,238,772–155,239,841, 1,070 bases1234565′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.6 kb of the gene's 23.4 kb; 594 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). VBP1 gene: VHL binding protein 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/vbp1

Vancouver

Dante Labs. VBP1 gene: VHL binding protein 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/vbp1

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