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Gene

TET1

tet methylcytosine dioxygenase 1

Summary

Cytogenetic location
10q21.3
Coordinates
Chromosome 10: 68,560,337–68,694,487 (GRCh38)
Exons
12 exons across 134.2 kb
Protein
2,136 amino acids
Also known as
LCX, KIAA1676, bA119F7.1
Previous symbols
CXXC6
MANE Select transcript
ENST00000373644.5NM_030625.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads TET1 yet. The test sequences your whole genome, so your data includes it all the same.

How TET1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 10, with a bracket where TET1 sits. TET1 and 14 genes near it on chromosome 10, from 68,127,412 to 69,127,411.Chromosome 1010q21.3p15.3p15.2p15.1p14p13p12.33p12.32p12.31p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.31q23.32q23.33q24.1q24.2q24.31q24.32q24.33q25.1q25.2q25.3q26.11q26.12q26.13q26.2q26.368.2 Mb68.4 Mb68.6 Mb68.8 Mb69 MbMYPN: 68,087,897–68,212,017, forward strandMYPNATOH7: 68,230,595–68,232,113, reverse strandATOH7PBLD: 68,262,014–68,334,114, reverse strandPBLDHNRNPH3: 68,331,174–68,344,002, forward strandHNRNPH3RUFY2: 68,341,107–68,407,381, reverse strandRUFY2DNA2: 68,414,061–68,472,121, reverse strandDNA2SLC25A16: 68,473,079–68,527,539, reverse strandSLC25A16TET1: 68,560,337–68,694,487, forward strandTET1CCAR1: 68,721,012–68,793,908, forward strandCCAR1STOX1: 68,827,199–68,895,448, forward strandSTOX1DDX50: 68,901,199–68,947,348, forward strandDDX50DDX21: 68,956,135–68,985,417, forward strandDDX21KIFBP: 68,988,732–69,043,544, forward strandKIFBPSRGN: 69,087,579–69,105,696, forward strandSRGNVPS26A: 69,123,512–69,174,412, forward strandVPS26ADiagram of TET1: 12 exons on the forward strand of chromosome 10Exon 1: 68,560,337–68,560,742, 406 basesExon 2: 68,572,217–68,574,252, 2,036 basesExon 3: 68,600,981–68,601,034, 54 basesExon 4: 68,644,698–68,647,005, 2,308 basesExon 5: 68,651,846–68,651,936, 91 basesExon 6: 68,652,501–68,652,594, 94 basesExon 7: 68,667,045–68,667,256, 212 basesExon 8: 68,672,895–68,673,045, 151 basesExon 9: 68,681,399–68,681,488, 90 basesExon 10: 68,682,836–68,682,973, 138 basesExon 11: 68,686,356–68,686,707, 352 basesExon 12: 68,690,808–68,694,487, 3,680 bases1246810125′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 9.6 kb of the gene's 134.2 kb; 6,411 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). TET1 gene: tet methylcytosine dioxygenase 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/tet1

Vancouver

Dante Labs. TET1 gene: tet methylcytosine dioxygenase 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/tet1

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