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Gene

RUNX3

RUNX family transcription factor 3

Summary

Cytogenetic location
1p36.11
Coordinates
Chromosome 1: 24,899,511–24,930,276 (GRCh38)
Exons
5 exons across 30.8 kb
Protein
415 amino acids
Also known as
AML2, PEBP2A3
Previous symbols
CBFA3
MANE Select transcript
ENST00000308873.11NM_004350.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads RUNX3 yet. The test sequences your whole genome, so your data includes it all the same.

How RUNX3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where RUNX3 sits. RUNX3 and 11 genes near it on chromosome 1, from 24,414,894 to 25,414,893.Chromosome 11p36.11p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q4424.6 Mb24.8 Mb25 Mb25.2 Mb25.4 MbSTPG1: 24,355,830–24,416,934, reverse strandSTPG1NIPAL3: 24,413,515–24,476,735, forward strandNIPAL3RCAN3: 24,502,320–24,541,040, forward strandRCAN3NCMAP: 24,556,061–24,609,328, forward strandNCMAPSRRM1: 24,631,716–24,673,281, forward strandSRRM1CLIC4: 24,745,342–24,844,324, forward strandCLIC4RUNX3: 24,899,511–24,930,276, reverse strandRUNX3SYF2: 25,220,702–25,232,509, reverse strandSYF2RSRP1: 25,242,248–25,338,244, reverse strandRSRP1RHD: 25,272,393–25,330,445, forward strandRHDTMEM50A: 25,337,915–25,362,362, forward strandTMEM50ARHCE: 25,362,249–25,430,192, reverse strandRHCEDiagram of RUNX3: 5 exons on the reverse strand of chromosome 1Exon 5: 24,899,511–24,902,666, 3,156 basesExon 4: 24,907,259–24,907,417, 159 basesExon 3: 24,919,240–24,919,344, 105 basesExon 2: 24,927,574–24,927,730, 157 basesExon 1: 24,929,587–24,930,276, 690 bases543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.3 kb of the gene's 30.8 kb; 1,248 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). RUNX3 gene: RUNX family transcription factor 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/runx3

Vancouver

Dante Labs. RUNX3 gene: RUNX family transcription factor 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/runx3

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