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Gene

RFX2

regulatory factor X2

Summary

Cytogenetic location
19p13.3
Coordinates
Chromosome 19: 5,993,164–6,110,500 (GRCh38)
Exons
18 exons across 117.3 kb
Protein
723 amino acids
Also known as
FLJ14226
MANE Select transcript
ENST00000303657.10NM_000635.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads RFX2 yet. The test sequences your whole genome, so your data includes it all the same.

How RFX2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where RFX2 sits. RFX2 and 35 genes near it on chromosome 19, from 5,551,832 to 6,551,831.Chromosome 1919p13.3p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.435.6 Mb5.8 Mb6 Mb6.2 Mb6.4 MbTINCR: 5,552,723–5,578,349, reverse strandTINCRSAFB2: 5,586,981–5,624,046, reverse strandSAFB2SAFB: 5,622,963–5,668,478, forward strandSAFBRPL36: 5,674,947–5,691,881, forward strandRPL36MICOS13: 5,678,414–5,680,940, reverse strandHSD11B1L: 5,680,604–5,688,524, forward strandHSD11B1LLONP1: 5,691,834–5,720,572, reverse strandLONP1CATSPERD: 5,720,637–5,778,734, forward strandCATSPERDPRR22: 5,782,960–5,784,752, reverse strandPRR22: 5,784,005–5,785,619, reverse strandDUS3L: 5,784,832–5,791,225, reverse strandDUS3LNRTN: 5,805,053–5,828,324, forward strandNRTNFUT6: 5,830,361–5,839,722, reverse strandFUT6FUT3: 5,842,257–5,851,535, reverse strandFUT3FUT5: 5,865,826–5,870,540, reverse strandFUT5: 5,866,171–5,903,787, reverse strandNDUFA11: 5,891,207–5,904,006, reverse strandVMAC: 5,904,723–5,910,853, forward strandVMAC: 5,904,841–5,914,707, forward strandCAPS: 5,912,339–5,916,211, forward strandCAPSRANBP3: 5,916,138–5,978,288, reverse strandRANBP3RFX2: 5,993,164–6,110,500, reverse strandRFX2ACSBG2: 6,135,247–6,193,094, forward strandACSBG2MLLT1: 6,210,377–6,280,029, reverse strandMLLT1ACER1: 6,306,030–6,333,612, reverse strandACER1CLPP: 6,361,427–6,370,242, forward strandCLPPALKBH7: 6,372,715–6,377,261, forward strandALKBH7PSPN: 6,375,148–6,379,058, reverse strandPSPNGTF2F1: 6,379,545–6,393,981, reverse strandGTF2F1KHSRP: 6,413,102–6,424,824, reverse strandKHSRPSLC25A41: 6,426,037–6,433,779, reverse strandSLC25A23: 6,436,068–6,465,203, reverse strandSLC25A23CRB3: 6,463,777–6,467,239, forward strandCRB3DENND1C: 6,467,207–6,482,557, reverse strandDENND1CTUBB4A: 6,494,308–6,502,848, reverse strandTUBB4ATNFSF9: 6,530,985–6,535,926, forward strandTNFSF9Diagram of RFX2: 18 exons on the reverse strand of chromosome 19Exon 18: 5,993,164–5,994,950, 1,787 basesExon 17: 5,995,601–5,995,643, 43 basesExon 16: 5,997,060–5,997,213, 154 basesExon 15: 6,001,815–6,002,023, 209 basesExon 14: 6,002,721–6,002,870, 150 basesExon 13: 6,004,201–6,004,298, 98 basesExon 12: 6,007,012–6,007,166, 155 basesExon 11: 6,007,690–6,007,802, 113 basesExon 10: 6,008,106–6,008,224, 119 basesExon 9: 6,010,136–6,010,251, 116 basesExon 8: 6,012,986–6,013,105, 120 basesExon 7: 6,016,090–6,016,271, 182 basesExon 6: 6,026,163–6,026,237, 75 basesExon 5: 6,039,980–6,040,241, 262 basesExon 4: 6,042,044–6,042,123, 80 basesExon 3: 6,044,193–6,044,282, 90 basesExon 2: 6,047,407–6,047,504, 98 basesExon 1: 6,110,393–6,110,500, 108 bases181510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4 kb of the gene's 117.3 kb; 2,172 of those bases code for the protein.

Sequencing RFX2

4Low

How hard RFX2 is to sequence with short reads, out of 100

  • Mappability0%
  • Homology0%
  • Repeats1.7%
  • GC content35%
  • Reference coverage0%

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). RFX2 gene: regulatory factor X2. Retrieved 17 October 2026, from https://dantelabs.com/genes/rfx2

Vancouver

Dante Labs. RFX2 gene: regulatory factor X2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/rfx2

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