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Gene

RBM39

RNA binding motif protein 39

Summary

Cytogenetic location
20q11.22
Coordinates
Chromosome 20: 35,701,347–35,742,260 (GRCh38)
Exons
17 exons across 40.9 kb
Protein
530 amino acids
Also known as
CC1.3, HCC1, CAPER, fSAP59, CAPERalpha
Previous symbols
RNPC2
MANE Select transcript
ENST00000253363.11NM_184234.3
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads RBM39 yet. The test sequences your whole genome, so your data includes it all the same.

How RBM39 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 20, with a bracket where RBM39 sits. RBM39 and 20 genes near it on chromosome 20, from 35,221,804 to 36,221,803.Chromosome 2020q11.22p13p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q12q13.11q13.12q13.13q13.2q13.31q13.32q13.3335.4 Mb35.6 Mb35.8 Mb36 Mb36.2 MbMMP24OS: 35,201,745–35,278,131, reverse strandMMP24: 35,226,559–35,277,030, forward strandMMP24: 35,267,885–35,280,043, reverse strandEIF6: 35,278,891–35,285,009, reverse strandEIF6SACK1C: 35,285,731–35,292,425, reverse strandSACK1CUQCC1: 35,301,219–35,412,070, reverse strandUQCC1GDF5: 35,433,347–35,454,754, reverse strandGDF5CEP250: 35,455,131–35,519,280, forward strandCEP250C20orf173: 35,523,186–35,529,652, reverse strandC20orf173ERGIC3: 35,542,022–35,557,634, forward strandERGIC3SPAG4: 35,615,594–35,621,613, forward strandSPAG4CPNE1: 35,626,031–35,664,962, reverse strandCPNE1: 35,632,340–35,674,544, reverse strandRBM12: 35,648,925–35,664,956, reverse strandRBM12NFS1: 35,668,052–35,699,376, reverse strandNFS1ROMO1: 35,699,228–35,703,939, forward strandROMO1RBM39: 35,701,347–35,742,260, reverse strandRBM39PHF20: 35,771,947–35,950,385, forward strandPHF20SCAND1: 35,953,617–35,959,472, reverse strandSCAND1CNBD2: 35,954,564–36,030,700, forward strandCNBD2EPB41L1: 36,091,504–36,232,799, forward strandEPB41L1Diagram of RBM39: 17 exons on the reverse strand of chromosome 20Exon 17: 35,701,347–35,704,581, 3,235 basesExon 16: 35,704,668–35,704,746, 79 basesExon 15: 35,705,225–35,705,330, 106 basesExon 14: 35,707,120–35,707,201, 82 basesExon 13: 35,709,224–35,709,274, 51 basesExon 12: 35,713,019–35,713,096, 78 basesExon 11: 35,714,185–35,714,389, 205 basesExon 10: 35,716,740–35,716,805, 66 basesExon 9: 35,721,740–35,721,877, 138 basesExon 8: 35,724,570–35,724,722, 153 basesExon 7: 35,725,038–35,725,155, 118 basesExon 6: 35,729,312–35,729,365, 54 basesExon 5: 35,729,462–35,729,527, 66 basesExon 4: 35,731,941–35,732,135, 195 basesExon 3: 35,738,968–35,739,017, 50 basesExon 2: 35,740,824–35,740,887, 64 basesExon 1: 35,741,941–35,742,260, 320 bases1716141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.1 kb of the gene's 40.9 kb; 1,593 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). RBM39 gene: RNA binding motif protein 39. Retrieved 16 October 2026, from https://dantelabs.com/genes/rbm39

Vancouver

Dante Labs. RBM39 gene: RNA binding motif protein 39 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/rbm39

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