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Gene

PTPN13

protein tyrosine phosphatase non-receptor type 13

Summary

Cytogenetic location
4q21.3
Coordinates
Chromosome 4: 86,594,315–86,815,161 (GRCh38)
Exons
48 exons across 220.8 kb
Protein
2,485 amino acids
Also known as
PTP1E, PTP-BAS, PTPL1, PTP-BL
MANE Select transcript
ENST00000411767.7NM_080683.3
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PTPN13 yet. The test sequences your whole genome, so your data includes it all the same.

How PTPN13 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 4, with a bracket where PTPN13 sits. PTPN13 and 6 genes near it on chromosome 4, from 86,204,738 to 87,204,737.Chromosome 44q21.3p16.3p16.2p16.1p15.33p15.32p15.31p15.2p15.1p14p13p12p11q11q12q13.1q13.2q13.3q21.1q21.21q21.22q21.23q21.3q22.1q22.2q22.3q23q24q25q26q27q28.1q28.2q28.3q31.1q31.21q31.22q31.23q31.3q32.1q32.2q32.3q33q34.1q34.2q34.3q35.1q35.286.4 Mb86.6 Mb86.8 Mb87 Mb87.2 MbMAPK10: 85,990,007–86,594,625, reverse strandMAPK10PTPN13: 86,594,315–86,815,161, forward strandPTPN13SLC10A6: 86,823,468–86,849,389, reverse strandSLC10A6C4orf36: 86,876,205–86,892,813, reverse strandC4orf36C4orf36: 86,886,472–86,936,178, reverse strandC4orf36AFF1: 86,934,203–87,141,073, forward strandAFF1KLHL8: 87,159,883–87,240,729, reverse strandKLHL8Diagram of PTPN13: 48 exons on the forward strand of chromosome 4Exon 1: 86,594,315–86,594,789, 475 basesExon 2: 86,635,252–86,635,371, 120 basesExon 3: 86,672,365–86,672,543, 179 basesExon 4: 86,686,710–86,686,775, 66 basesExon 5: 86,689,005–86,689,190, 186 basesExon 6: 86,693,587–86,693,674, 88 basesExon 7: 86,701,241–86,701,801, 561 basesExon 8: 86,716,530–86,716,625, 96 basesExon 9: 86,717,024–86,717,117, 94 basesExon 10: 86,722,212–86,722,434, 223 basesExon 11: 86,732,400–86,732,474, 75 basesExon 12: 86,732,592–86,732,766, 175 basesExon 13: 86,734,303–86,734,456, 154 basesExon 14: 86,734,737–86,734,875, 139 basesExon 15: 86,735,594–86,735,746, 153 basesExon 16: 86,741,634–86,741,816, 183 basesExon 17: 86,744,966–86,745,128, 163 basesExon 18: 86,750,470–86,750,887, 418 basesExon 19: 86,751,027–86,751,124, 98 basesExon 20: 86,753,009–86,753,065, 57 basesExon 21: 86,758,260–86,758,349, 90 basesExon 22: 86,758,678–86,758,785, 108 basesExon 23: 86,758,942–86,759,073, 132 basesExon 24: 86,762,727–86,763,190, 464 basesExon 25: 86,764,593–86,764,724, 132 basesExon 26: 86,765,395–86,765,488, 94 basesExon 27: 86,766,432–86,766,517, 86 basesExon 28: 86,767,817–86,767,976, 160 basesExon 29: 86,769,769–86,769,983, 215 basesExon 30: 86,770,101–86,770,199, 99 basesExon 31: 86,771,171–86,771,535, 365 basesExon 32: 86,772,778–86,772,958, 181 basesExon 33: 86,774,373–86,774,531, 159 basesExon 34: 86,775,171–86,775,342, 172 basesExon 35: 86,775,442–86,775,652, 211 basesExon 36: 86,780,402–86,780,472, 71 basesExon 37: 86,782,201–86,782,262, 62 basesExon 38: 86,784,465–86,784,558, 94 basesExon 39: 86,785,231–86,785,368, 138 basesExon 40: 86,785,848–86,785,936, 89 basesExon 41: 86,796,874–86,796,929, 56 basesExon 42: 86,799,101–86,799,204, 104 basesExon 43: 86,803,709–86,803,857, 149 basesExon 44: 86,805,279–86,805,369, 91 basesExon 45: 86,807,560–86,807,897, 338 basesExon 46: 86,809,769–86,809,984, 216 basesExon 47: 86,811,046–86,811,108, 63 basesExon 48: 86,814,456–86,815,161, 706 bases151015202530354045485′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 8.5 kb of the gene's 220.8 kb; 7,458 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PTPN13 gene: protein tyrosine phosphatase non-receptor type 13. Retrieved 16 October 2026, from https://dantelabs.com/genes/ptpn13

Vancouver

Dante Labs. PTPN13 gene: protein tyrosine phosphatase non-receptor type 13 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/ptpn13

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