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Gene

PHTF1

putative homeodomain transcription factor 1

Summary

Cytogenetic location
1p13.2
Coordinates
Chromosome 1: 113,696,831–113,759,486 (GRCh38)
Exons
19 exons across 62.7 kb
Protein
762 amino acids
Previous symbols
PHTF
MANE Select transcript
ENST00000369604.6NM_001323043.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PHTF1 yet. The test sequences your whole genome, so your data includes it all the same.

How PHTF1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where PHTF1 sits. PHTF1 and 9 genes near it on chromosome 1, from 113,228,159 to 114,228,158.Chromosome 11p13.2p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q44113.4 Mb113.6 Mb113.8 Mb114 Mb114.2 MbMAGI3: 113,390,390–113,687,431, forward strandMAGI3PHTF1: 113,696,831–113,759,486, reverse strandPHTF1RSBN1: 113,761,429–113,812,551, reverse strandRSBN1PTPN22: 113,813,811–113,871,753, reverse strandPTPN22BCL2L15: 113,876,816–113,887,588, reverse strandBCL2L15AP4B1: 113,894,194–113,905,722, reverse strandAP4B1DCLRE1B: 113,904,403–113,914,140, forward strandDCLRE1BHIPK1: 113,929,324–113,977,869, forward strandHIPK1OLFML3: 113,979,024–114,035,572, forward strandOLFML3SYT6: 114,089,291–114,153,880, reverse strandSYT6Diagram of PHTF1: 19 exons on the reverse strand of chromosome 1Exon 19: 113,696,831–113,697,725, 895 basesExon 18: 113,698,262–113,698,387, 126 basesExon 17: 113,699,704–113,699,799, 96 basesExon 16: 113,700,794–113,700,949, 156 basesExon 15: 113,704,081–113,704,167, 87 basesExon 14: 113,704,666–113,704,797, 132 basesExon 13: 113,705,890–113,706,162, 273 basesExon 12: 113,706,594–113,706,722, 129 basesExon 11: 113,710,254–113,710,475, 222 basesExon 10: 113,711,746–113,711,835, 90 basesExon 9: 113,711,940–113,712,113, 174 basesExon 8: 113,713,279–113,713,438, 160 basesExon 7: 113,724,759–113,724,893, 135 basesExon 6: 113,726,418–113,726,574, 157 basesExon 5: 113,738,110–113,738,268, 159 basesExon 4: 113,738,730–113,738,799, 70 basesExon 3: 113,757,699–113,757,755, 57 basesExon 2: 113,758,659–113,758,733, 75 basesExon 1: 113,759,023–113,759,486, 464 bases191510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.7 kb of the gene's 62.7 kb; 2,289 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PHTF1 gene: putative homeodomain transcription factor 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/phtf1

Vancouver

Dante Labs. PHTF1 gene: putative homeodomain transcription factor 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/phtf1

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