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Gene

PDXDC1

pyridoxal dependent decarboxylase domain containing 1

Summary

Cytogenetic location
16p13.11
Coordinates
Chromosome 16: 14,975,026–15,038,332 (GRCh38)
Exons
23 exons across 63.3 kb
Protein
788 amino acids
Also known as
KIAA0251
MANE Select transcript
ENST00000396410.9NM_015027.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PDXDC1 yet. The test sequences your whole genome, so your data includes it all the same.

How PDXDC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 16, with a bracket where PDXDC1 sits. PDXDC1 and 13 genes near it on chromosome 16, from 14,506,679 to 15,506,678.Chromosome 1616p13.11p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.314.6 Mb14.8 Mb15 Mb15.2 Mb15.4 MbPARN: 14,435,699–14,632,728, reverse strandPARNBFAR: 14,632,813–14,669,252, forward strandBFARPLA2G10: 14,672,382–14,694,493, reverse strandPLA2G10NPIPA3: 14,703,411–14,726,342, forward strandNPIPA3NPIPA2: 14,742,533–14,765,462, forward strandNPIPA2NOMO1: 14,833,691–14,896,158, forward strandNOMO1NPIPA1: 14,922,802–14,952,060, forward strandNPIPA1PDXDC1: 14,975,026–15,038,332, forward strandPDXDC1NTAN1: 15,037,853–15,056,082, reverse strandNTAN1RRN3: 15,059,964–15,094,311, reverse strandRRN3NPIPA5: 15,363,628–15,381,047, reverse strandNPIPA5MPV17L: 15,395,747–15,413,271, forward strandMPV17L: 15,395,754–15,515,348, forward strandBMERB1: 15,434,475–15,625,028, forward strandBMERB1Diagram of PDXDC1: 23 exons on the forward strand of chromosome 16Exon 1: 14,975,026–14,975,220, 195 basesExon 2: 14,997,753–14,997,826, 74 basesExon 3: 14,998,340–14,998,405, 66 basesExon 4: 15,001,776–15,001,856, 81 basesExon 5: 15,004,187–15,004,333, 147 basesExon 6: 15,006,394–15,006,583, 190 basesExon 7: 15,008,779–15,008,847, 69 basesExon 8: 15,009,681–15,009,759, 79 basesExon 9: 15,016,129–15,016,213, 85 basesExon 10: 15,017,120–15,017,168, 49 basesExon 11: 15,017,321–15,017,422, 102 basesExon 12: 15,018,840–15,018,965, 126 basesExon 13: 15,022,704–15,022,754, 51 basesExon 14: 15,026,643–15,026,706, 64 basesExon 15: 15,028,878–15,028,966, 89 basesExon 16: 15,029,951–15,030,056, 106 basesExon 17: 15,031,735–15,031,906, 172 basesExon 18: 15,032,861–15,032,979, 119 basesExon 19: 15,033,278–15,033,399, 122 basesExon 20: 15,034,286–15,034,378, 93 basesExon 21: 15,034,457–15,034,553, 97 basesExon 22: 15,035,449–15,035,553, 105 basesExon 23: 15,036,016–15,038,332, 2,317 bases15101520235′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.6 kb of the gene's 63.3 kb; 2,367 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PDXDC1 gene: pyridoxal dependent decarboxylase domain containing 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/pdxdc1

Vancouver

Dante Labs. PDXDC1 gene: pyridoxal dependent decarboxylase domain containing 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/pdxdc1

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