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Gene

HOXA9

homeobox A9

Summary

Cytogenetic location
7p15.2
Coordinates
Chromosome 7: 27,162,438–27,165,537 (GRCh38)
Exons
2 exons across 3.1 kb
Protein
272 amino acids
Previous symbols
HOX1G, HOX1
MANE Select transcript
ENST00000343483.7NM_152739.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads HOXA9 yet. The test sequences your whole genome, so your data includes it all the same.

How HOXA9 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 7, with a bracket where HOXA9 sits. HOXA9 and 14 genes near it on chromosome 7, from 26,663,988 to 27,663,987.Chromosome 77p15.2p22.3p22.2p22.1p21.3p21.2p21.1p15.3p15.2p15.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.21q11.22q11.23q21.11q21.12q21.13q21.2q21.3q22.1q22.2q22.3q31.1q31.2q31.31q31.32q31.33q32.1q32.2q32.3q33q34q35q36.1q36.2q36.326.8 Mb27 Mb27.2 Mb27.4 Mb27.6 MbSKAP2: 26,667,003–26,995,239, reverse strandSKAP2HOXA1: 27,092,993–27,096,039, reverse strandHOXA1HOXA2: 27,099,978–27,102,686, reverse strandHOXA2HOXA3: 27,106,184–27,152,610, reverse strandHOXA4: 27,127,887–27,130,780, reverse strandHOXA5: 27,141,052–27,143,719, reverse strandHOXA6: 27,144,103–27,150,603, reverse strandHOXA7: 27,153,716–27,157,936, reverse strandHOXA7HOXA9: 27,162,438–27,165,537, reverse strandHOXA9HOXA10-HOXA9: 27,162,438–27,180,239, reverse strandHOXA10-HOXA9HOXA10: 27,170,592–27,180,261, reverse strandHOXA10HOXA11: 27,181,157–27,185,253, reverse strandHOXA13: 27,193,503–27,200,091, reverse strandEVX1: 27,242,700–27,250,493, forward strandEVX1HIBADH: 27,486,365–27,663,013, reverse strandHIBADHDiagram of HOXA9: 2 exons on the reverse strand of chromosome 7Exon 2: 27,162,438–27,163,841, 1,404 basesExon 1: 27,164,878–27,165,537, 660 bases215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.1 kb of the gene's 3.1 kb; 819 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). HOXA9 gene: homeobox A9. Retrieved 17 October 2026, from https://dantelabs.com/genes/hoxa9

Vancouver

Dante Labs. HOXA9 gene: homeobox A9 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/hoxa9

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