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Gene

HOTAIR

HOX transcript antisense RNA

Summary

Cytogenetic location
12q13.13
Coordinates
Chromosome 12: 53,962,312–53,974,954 (GRCh38)
Exons
7 exons across 12.6 kb
Also known as
HOXC-AS4, HOXC11-AS1, NCRNA00072
MANE Select transcript
ENST00000424518.6NR_186241.1
Locus type
RNA, long non-coding

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads HOTAIR yet. The test sequences your whole genome, so your data includes it all the same.

How HOTAIR is laid out

  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 12, with a bracket where HOTAIR sits. HOTAIR and 27 genes near it on chromosome 12, from 53,468,633 to 54,468,632.Chromosome 1212q13.13p13.33p13.32p13.31p13.2p13.1p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11q12q13.11q13.12q13.13q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.31q24.32q24.3353.6 Mb53.8 Mb54 Mb54.2 Mb54.4 MbPCBP2: 53,451,900–53,484,618, forward strandMAP3K12: 53,479,669–53,500,063, reverse strandTARBP2: 53,500,921–53,506,431, forward strandTARBP2NPFF: 53,506,684–53,507,491, reverse strandNPFFATF7-NPFF: 53,506,691–53,625,979, reverse strandATF7-NPFFATF7: 53,507,856–53,626,412, reverse strandATF7ATP5MC2: 53,626,515–53,678,658, reverse strandATP5MC2CALCOCO1: 53,708,517–53,727,745, reverse strandCALCOCO1HOXC13: 53,938,718–53,946,544, forward strandHOXC12: 53,954,903–53,958,956, forward strandHOXC12HOTAIR: 53,962,312–53,974,954, reverse strandHOTAIRHOXC11: 53,973,126–53,977,643, forward strandHOXC11HOXC10: 53,985,065–53,990,279, forward strandHOXC10: 53,985,845–54,034,888, forward strandHOXC6: 53,990,624–54,030,823, forward strandHOXC9: 53,994,895–54,003,337, forward strandHOXC8: 54,008,911–54,012,769, forward strandHOXC4: 54,015,897–54,056,030, forward strandHOXC5: 54,033,048–54,035,361, forward strandSMUG1: 54,121,277–54,189,008, reverse strandSMUG1CBX5: 54,230,942–54,280,141, reverse strandCBX5HNRNPA1: 54,280,193–54,287,088, forward strandHNRNPA1NFE2: 54,292,107–54,301,259, reverse strandNFE2COPZ1: 54,301,202–54,351,848, forward strandCOPZ1GPR84: 54,362,445–54,364,493, reverse strandGPR84ZNF385A: 54,369,129–54,391,338, reverse strandZNF385AITGA5: 54,395,261–54,419,515, reverse strandITGA5GTSF1: 54,455,950–54,473,602, reverse strandGTSF1Diagram of HOTAIR: 7 exons on the reverse strand of chromosome 12Exon 7: 53,962,312–53,964,124, 1,813 basesExon 6: 53,964,231–53,964,283, 53 basesExon 5: 53,965,964–53,966,087, 124 basesExon 4: 53,966,276–53,966,377, 102 basesExon 3: 53,967,269–53,967,394, 126 basesExon 2: 53,968,617–53,968,756, 140 basesExon 1: 53,974,898–53,974,954, 57 bases76543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.4 kb of the gene's 12.6 kb.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). HOTAIR gene: HOX transcript antisense RNA. Retrieved 17 October 2026, from https://dantelabs.com/genes/hotair

Vancouver

Dante Labs. HOTAIR gene: HOX transcript antisense RNA [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/hotair

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