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Gene

CSKMT

citrate synthase lysine methyltransferase

Summary

Cytogenetic location
11q12.3
Coordinates
Chromosome 11: 62,665,312–62,668,108 (GRCh38)
Exons
3 exons across 2.8 kb
Protein
240 amino acids
Also known as
U99HG, CS-KMT
Previous symbols
METTL12
MANE Select transcript
ENST00000532971.2NM_001043229.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CSKMT yet. The test sequences your whole genome, so your data includes it all the same.

How CSKMT is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 11, with a bracket where CSKMT sits. CSKMT and 45 genes near it on chromosome 11, from 62,166,710 to 63,166,709.Chromosome 1111q12.3p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2562.2 Mb62.4 Mb62.6 Mb62.8 Mb63 MbSCGB1D1: 62,190,216–62,193,539, forward strandSCGB1D1SCGB2A1: 62,208,666–62,213,943, forward strandSCGB2A1SCGB1D2: 62,242,210–62,244,812, forward strandSCGB1D2SCGB2A2: 62,270,158–62,273,160, forward strandSCGB2A2SCGB1D4: 62,296,281–62,299,075, reverse strandSCGB1D4ASRGL1: 62,337,347–62,393,415, forward strandASRGL1SCGB1A1: 62,405,103–62,423,195, forward strandSCGB1A1AHNAK: 62,433,532–62,556,235, reverse strandAHNAKEEF1G: 62,559,593–62,574,086, reverse strand: 62,559,603–62,591,531, reverse strandTUT1: 62,575,045–62,591,637, reverse strandTUT1MTA2: 62,593,214–62,601,927, reverse strandMTA2EML3: 62,602,216–62,612,978, reverse strandROM1: 62,611,722–62,615,116, forward strandROM1B3GAT3: 62,614,993–62,622,180, reverse strandGANAB: 62,624,821–62,646,726, reverse strandINTS5: 62,646,848–62,653,316, reverse strand: 62,649,694–62,665,178, reverse strandC11orf98: 62,662,815–62,665,251, reverse strandC11orf98LBHD1: 62,662,817–62,672,284, reverse strandLBHD1CSKMT: 62,665,312–62,668,108, forward strandCSKMTUQCC3: 62,670,273–62,674,001, forward strandUQCC3UBXN1: 62,676,498–62,679,332, reverse strandLRRN4CL: 62,686,406–62,689,609, reverse strandBSCL2: 62,689,289–62,709,861, reverse strandHNRNPUL2-BSCL2: 62,690,275–62,727,384, reverse strandGNG3: 62,706,400–62,712,083, forward strandHNRNPUL2: 62,712,630–62,727,637, reverse strand: 62,726,885–62,727,265, reverse strandTTC9C: 62,727,687–62,740,293, forward strandTTC9CZBTB3: 62,737,172–62,758,835, reverse strandPOLR2G: 62,761,453–62,766,715, forward strandPOLR2GTAF6L: 62,771,307–62,787,342, forward strandTAF6LTMEM223: 62,771,629–62,792,022, reverse strandTMEM179B: 62,787,375–62,792,166, forward strandNXF1: 62,792,123–62,806,302, reverse strandSTX5: 62,806,860–62,832,076, reverse strandSTX5TEX54: 62,832,321–62,832,841, reverse strandTEX54WDR74: 62,832,342–62,842,228, reverse strandWDR74RNU2-2: 62,841,619–62,841,809, reverse strandSLC3A2: 62,855,970–62,888,910, forward strandSLC3A2CHRM1: 62,907,828–62,921,877, reverse strandCHRM1SLC22A6: 62,936,385–62,984,973, reverse strandSLC22A6SLC22A8: 62,989,154–63,017,561, reverse strandSLC22A8SLC22A24: 63,077,406–63,144,221, reverse strandSLC22A24SLC22A25: 63,158,437–63,243,788, reverse strandSLC22A25Diagram of CSKMT: 3 exons on the forward strand of chromosome 11Exon 1: 62,665,312–62,665,332, 21 basesExon 2: 62,665,647–62,665,946, 300 basesExon 3: 62,666,396–62,668,108, 1,713 bases1235′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2 kb of the gene's 2.8 kb; 723 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CSKMT gene: citrate synthase lysine methyltransferase. Retrieved 17 October 2026, from https://dantelabs.com/genes/cskmt

Vancouver

Dante Labs. CSKMT gene: citrate synthase lysine methyltransferase [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cskmt

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