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Gene

CLRN3

clarin 3

Summary

Cytogenetic location
10q26.2
Coordinates
Chromosome 10: 127,877,841–127,892,941 (GRCh38)
Exons
3 exons across 15.1 kb
Protein
226 amino acids
Also known as
MGC32871, USH3AL1
Previous symbols
TMEM12
MANE Select transcript
ENST00000368671.4NM_152311.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CLRN3 yet. The test sequences your whole genome, so your data includes it all the same.

How CLRN3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 10, with a bracket where CLRN3 sits. CLRN3 and 5 genes near it on chromosome 10, from 127,385,391 to 128,385,390.Chromosome 1010q26.2p15.3p15.2p15.1p14p13p12.33p12.32p12.31p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.31q23.32q23.33q24.1q24.2q24.31q24.32q24.33q25.1q25.2q25.3q26.11q26.12q26.13q26.2q26.3127.4 Mb127.6 Mb127.8 Mb128 Mb128.2 MbDOCK1: 126,905,388–127,453,803, forward strandDOCK1NPS: 127,549,309–127,553,540, forward strandNPSFOXI2: 127,737,118–127,741,183, forward strandFOXI2CLRN3: 127,877,841–127,892,941, reverse strandCLRN3PTPRE: 127,906,800–128,085,856, forward strandPTPREMKI67: 128,096,659–128,126,458, reverse strandMKI67Diagram of CLRN3: 3 exons on the reverse strand of chromosome 10Exon 3: 127,877,841–127,878,420, 580 basesExon 2: 127,883,696–127,883,875, 180 basesExon 1: 127,892,556–127,892,941, 386 bases3215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.1 kb of the gene's 15.1 kb; 681 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CLRN3 gene: clarin 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/clrn3

Vancouver

Dante Labs. CLRN3 gene: clarin 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/clrn3

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