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Gene

CLIP3

CAP-Gly domain containing linker protein 3

Summary

Cytogenetic location
19q13.12
Coordinates
Chromosome 19: 36,014,660–36,032,873 (GRCh38)
Exons
14 exons across 18.2 kb
Protein
547 amino acids
Also known as
CLIPR-59, RSNL1
MANE Select transcript
ENST00000360535.9NM_015526.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CLIP3 yet. The test sequences your whole genome, so your data includes it all the same.

How CLIP3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where CLIP3 sits. CLIP3 and 45 genes near it on chromosome 19, from 35,523,767 to 36,523,766.Chromosome 1919q13.12p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4335.6 Mb35.8 Mb36 Mb36.2 Mb36.4 MbSBSN: 35,523,367–35,528,351, reverse strandSBSNGAPDHS: 35,533,455–35,545,319, forward strandGAPDHSTMEM147: 35,545,600–35,547,527, forward strandTMEM147ATP4A: 35,549,339–35,563,658, reverse strandATP4APMIS2: 35,586,161–35,587,296, forward strandPMIS2HAUS5: 35,612,735–35,625,355, forward strandHAUS5RBM42: 35,628,989–35,638,927, forward strandRBM42ETV2: 35,641,730–35,644,871, forward strandETV2COX6B1: 35,648,230–35,662,890, forward strandCOX6B1UPK1A: 35,666,516–35,678,481, forward strandUPK1AZBTB32: 35,704,558–35,717,048, forward strandKMT2B: 35,717,973–35,738,880, forward strandIGFLR1: 35,738,798–35,742,459, reverse strand: 35,739,252–35,745,432, reverse strandU2AF1L4: 35,742,464–35,745,460, reverse strandPSENEN: 35,745,070–35,747,519, forward strand: 35,745,678–35,754,519, forward strandLIN37: 35,748,361–35,754,519, forward strandHSPB6: 35,754,566–35,758,079, reverse strandHSPB6PROSER3: 35,758,143–35,771,398, forward strandPROSER3ARHGAP33: 35,774,532–35,788,822, forward strandARHGAP33PRODH2: 35,799,975–35,813,299, reverse strandPRODH2NPHS1: 35,825,372–35,869,287, reverse strandNPHS1KIRREL2: 35,851,369–35,867,145, forward strandAPLP1: 35,867,899–35,879,803, forward strandAPLP1NFKBID: 35,887,129–35,902,303, reverse strandNFKBIDHCST: 35,899,017–35,904,377, forward strandHCSTTYROBP: 35,904,398–35,908,318, reverse strandTYROBPLRFN3: 35,935,358–35,946,624, forward strandLRFN3SDHAF1: 35,995,188–35,996,312, forward strandSYNE4: 36,000,545–36,008,831, reverse strandSYNE4ALKBH6: 36,009,113–36,014,297, reverse strandALKBH6CLIP3: 36,014,660–36,032,873, reverse strandCLIP3THAP8: 36,033,393–36,054,739, reverse strandTHAP8WDR62: 36,054,649–36,105,112, forward strandWDR62OVOL3: 36,111,116–36,113,711, forward strandOVOL3POLR2I: 36,111,817–36,115,213, reverse strandPOLR2ITBCB: 36,114,289–36,125,948, forward strandTBCBCAPNS1: 36,139,953–36,150,356, forward strandCAPNS1COX7A1: 36,150,287–36,152,699, reverse strandZNF565: 36,181,542–36,246,257, reverse strandZNF565ZNF146: 36,214,602–36,239,969, forward strandZNF146ZFP14: 36,334,453–36,379,208, reverse strandZFP14ZFP82: 36,383,120–36,418,924, reverse strandZFP82ZNF566: 36,445,119–36,489,902, reverse strandZNF566ZNF260: 36,510,687–36,528,696, reverse strandZNF260Diagram of CLIP3: 14 exons on the reverse strand of chromosome 19Exon 14: 36,014,660–36,016,212, 1,553 basesExon 13: 36,016,907–36,016,979, 73 basesExon 12: 36,017,386–36,017,450, 65 basesExon 11: 36,017,655–36,017,778, 124 basesExon 10: 36,017,848–36,017,991, 144 basesExon 9: 36,018,898–36,019,026, 129 basesExon 8: 36,019,171–36,019,306, 136 basesExon 7: 36,024,396–36,024,632, 237 basesExon 6: 36,026,147–36,026,265, 119 basesExon 5: 36,026,586–36,026,747, 162 basesExon 4: 36,026,952–36,027,045, 94 basesExon 3: 36,027,132–36,027,271, 140 basesExon 2: 36,032,192–36,032,415, 224 basesExon 1: 36,032,724–36,032,873, 150 bases141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.4 kb of the gene's 18.2 kb; 1,644 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CLIP3 gene: CAP-Gly domain containing linker protein 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/clip3

Vancouver

Dante Labs. CLIP3 gene: CAP-Gly domain containing linker protein 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/clip3

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