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Gene

CDK5RAP1

CDK5RAP1 mitochondrial tRNA methylthiotransferase

Summary

Cytogenetic location
20q11.21
Coordinates
Chromosome 20: 33,358,839–33,401,519 (GRCh38)
Exons
14 exons across 42.7 kb
Protein
587 amino acids
Also known as
CGI-05, HSPC167, C42
Previous symbols
C20orf34
MANE Select transcript
ENST00000346416.7NM_016408.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CDK5RAP1 yet. The test sequences your whole genome, so your data includes it all the same.

How CDK5RAP1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 20, with a bracket where CDK5RAP1 sits. CDK5RAP1 and 19 genes near it on chromosome 20, from 32,880,179 to 33,880,178.Chromosome 2020q11.21p13p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q12q13.11q13.12q13.13q13.2q13.31q13.32q13.3333 Mb33.2 Mb33.4 Mb33.6 Mb33.8 MbEFCAB8: 32,858,923–32,961,845, forward strandEFCAB8SUN5: 32,983,773–33,004,433, reverse strandSUN5BPIFB2: 33,007,696–33,023,709, forward strandBPIFB2BPIFB6: 33,029,189–33,044,230, forward strandBPIFB6BPIFB3: 33,053,903–33,073,847, forward strandBPIFB3BPIFB4: 33,079,643–33,111,751, forward strandBPIFB4BPIFA2: 33,161,768–33,181,412, forward strandBPIFA2BPIFA3: 33,217,310–33,227,806, forward strandBPIFA3BPIFA1: 33,235,987–33,243,311, forward strandBPIFA1BPIFB1: 33,273,480–33,310,382, forward strandBPIFB1CDK5RAP1: 33,358,839–33,401,519, reverse strandCDK5RAP1SNTA1: 33,407,955–33,443,897, reverse strandSNTA1CBFA2T2: 33,490,060–33,650,036, forward strandCBFA2T2NECAB3: 33,657,087–33,674,473, reverse strandNECAB3C20orf144: 33,662,327–33,665,619, forward strandC20orf144ACTL10: 33,666,943–33,668,525, forward strandACTL10E2F1: 33,675,477–33,686,426, reverse strandE2F1PXMP4: 33,702,758–33,720,412, reverse strandZNF341: 33,731,657–33,792,269, forward strandZNF341CHMP4B: 33,811,253–33,854,366, forward strandCHMP4BDiagram of CDK5RAP1: 14 exons on the reverse strand of chromosome 20Exon 14: 33,358,839–33,359,123, 285 basesExon 13: 33,360,351–33,360,491, 141 basesExon 12: 33,366,859–33,367,008, 150 basesExon 11: 33,370,499–33,370,629, 131 basesExon 10: 33,372,642–33,372,697, 56 basesExon 9: 33,374,115–33,374,212, 98 basesExon 8: 33,379,461–33,379,691, 231 basesExon 7: 33,385,650–33,385,770, 121 basesExon 6: 33,387,323–33,387,533, 211 basesExon 5: 33,392,142–33,392,242, 101 basesExon 4: 33,394,032–33,394,066, 35 basesExon 3: 33,395,013–33,395,116, 104 basesExon 2: 33,396,761–33,397,084, 324 basesExon 1: 33,401,428–33,401,519, 92 bases14131211109876543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.1 kb of the gene's 42.7 kb; 1,764 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CDK5RAP1 gene: CDK5RAP1 mitochondrial tRNA methylthiotransferase. Retrieved 17 October 2026, from https://dantelabs.com/genes/cdk5rap1

Vancouver

Dante Labs. CDK5RAP1 gene: CDK5RAP1 mitochondrial tRNA methylthiotransferase [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cdk5rap1

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