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Gene

CAPN10

calpain 10

Summary

Cytogenetic location
2q37.3
Coordinates
Chromosome 2: 240,586,734–240,599,104 (GRCh38)
Exons
12 exons across 12.4 kb
Protein
672 amino acids
MANE Select transcript
ENST00000391984.7NM_023083.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CAPN10 yet. The test sequences your whole genome, so your data includes it all the same.

How CAPN10 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 2, with a bracket where CAPN10 sits. CAPN10 and 15 genes near it on chromosome 2, from 240,092,919 to 241,092,918.Chromosome 22q37.3p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.3240.2 Mb240.4 Mb240.6 Mb240.8 Mb241 MbCOPS9: 240,126,563–240,136,807, reverse strandCOPS9OTOS: 240,139,026–240,144,562, reverse strandOTOSGPC1: 240,435,434–240,468,115, forward strandGPC1ANKMY1: 240,479,422–240,569,209, reverse strandANKMY1DUSP28: 240,560,054–240,565,256, forward strandDUSP28RNPEPL1: 240,565,804–240,581,372, forward strandRNPEPL1CAPN10: 240,586,734–240,599,104, forward strandCAPN10GPR35: 240,605,404–240,633,159, forward strandGPR35AQP12B: 240,676,418–240,682,906, reverse strandAQP12BAQP12A: 240,691,866–240,698,483, forward strandAQP12AKIF1A: 240,713,761–240,824,320, reverse strandKIF1AAGXT: 240,868,543–240,881,531, forward strandAGXTMAB21L4: 240,886,048–240,896,894, reverse strandMAB21L4CROCC2: 240,906,330–240,993,311, forward strandCROCC2SNED1: 240,998,612–241,095,579, forward strandSNED1MTERF4: 241,072,169–241,102,332, reverse strandMTERF4Diagram of CAPN10: 12 exons on the forward strand of chromosome 2Exon 6: 1 known disease-causing siteExon 1: 240,586,734–240,587,052, 319 basesExon 2: 240,589,343–240,589,474, 132 basesExon 3: 240,590,815–240,591,011, 197 basesExon 4: 240,591,933–240,592,150, 218 basesExon 5: 240,593,906–240,594,047, 142 basesExon 6: 240,594,543–240,594,709, 167 basesExon 7: 240,595,024–240,595,304, 281 basesExon 8: 240,596,319–240,596,521, 203 basesExon 9: 240,596,681–240,596,942, 262 basesExon 10: 240,597,888–240,598,087, 200 basesExon 11: 240,598,352–240,598,397, 46 basesExon 12: 240,598,651–240,599,104, 454 bases1234567891011125′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.6 kb of the gene's 12.4 kb; 2,019 of those bases code for the protein.

How a genome test reads CAPN10

1

position in CAPN10 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 12.4 kb of CAPN10, introns included, not only the 2.6 kb of exons.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). CAPN10 gene: calpain 10. Retrieved 17 October 2026, from https://dantelabs.com/genes/capn10

Vancouver

Dante Labs. CAPN10 gene: calpain 10 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/capn10

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