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Gene

SLC9C1

solute carrier family 9 member C1

Summary

Cytogenetic location
3q13.2
Coordinates
Chromosome 3: 112,140,898–112,294,216 (GRCh38)
Exons
29 exons across 153.3 kb
Protein
1,177 amino acids
Also known as
NHE
Previous symbols
SLC9A10
MANE Select transcript
ENST00000305815.10NM_183061.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SLC9C1 yet. The test sequences your whole genome, so your data includes it all the same.

How SLC9C1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 3, with a bracket where SLC9C1 sits. SLC9C1 and 12 genes near it on chromosome 3, from 111,717,557 to 112,717,556.Chromosome 33q13.2p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q29111.8 Mb112 Mb112.2 Mb112.4 Mb112.6 MbPLCXD2: 111,674,655–111,846,447, forward strandPLCXD2PHLDB2: 111,732,403–111,976,837, forward strandPHLDB2ABHD10: 111,978,972–111,993,368, forward strandABHD10TAGLN3: 111,998,735–112,013,890, forward strandTAGLN3TMPRSS7: 112,034,736–112,081,269, forward strandTMPRSS7C3orf52: 112,086,331–112,132,995, forward strandC3orf52GCSAM: 112,120,839–112,133,270, reverse strandGCSAMSLC9C1: 112,140,898–112,294,216, reverse strandSLC9C1CD200: 112,332,235–112,363,181, forward strandCD200BTLA: 112,461,067–112,499,668, reverse strandBTLAATG3: 112,531,772–112,562,318, reverse strandATG3SLC35A5: 112,561,269–112,587,350, forward strandSLC35A5CCDC80: 112,596,797–112,649,530, reverse strandCCDC80Diagram of SLC9C1: 29 exons on the reverse strand of chromosome 3Exon 29: 112,140,898–112,141,281, 384 basesExon 28: 112,151,857–112,151,963, 107 basesExon 27: 112,154,997–112,155,049, 53 basesExon 26: 112,167,221–112,167,347, 127 basesExon 25: 112,168,877–112,169,062, 186 basesExon 24: 112,169,197–112,169,328, 132 basesExon 23: 112,179,531–112,179,701, 171 basesExon 22: 112,180,564–112,180,662, 99 basesExon 21: 112,182,133–112,182,258, 126 basesExon 20: 112,199,321–112,199,469, 149 basesExon 19: 112,200,711–112,200,762, 52 basesExon 18: 112,202,250–112,202,399, 150 basesExon 17: 112,204,218–112,204,403, 186 basesExon 16: 112,208,178–112,208,373, 196 basesExon 15: 112,217,442–112,217,561, 120 basesExon 14: 112,221,128–112,221,225, 98 basesExon 13: 112,231,361–112,231,486, 126 basesExon 12: 112,239,840–112,240,006, 167 basesExon 11: 112,243,995–112,244,076, 82 basesExon 10: 112,262,924–112,263,098, 175 basesExon 9: 112,264,200–112,264,343, 144 basesExon 8: 112,266,238–112,266,340, 103 basesExon 7: 112,269,916–112,270,077, 162 basesExon 6: 112,274,897–112,275,025, 129 basesExon 5: 112,277,695–112,277,860, 166 basesExon 4: 112,278,729–112,278,857, 129 basesExon 3: 112,280,683–112,280,783, 101 basesExon 2: 112,286,704–112,286,878, 175 basesExon 1: 112,294,093–112,294,216, 124 bases2925201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.1 kb of the gene's 153.3 kb; 3,534 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SLC9C1 gene: solute carrier family 9 member C1. Retrieved 17 October 2026, from https://dantelabs.com/genes/slc9c1

Vancouver

Dante Labs. SLC9C1 gene: solute carrier family 9 member C1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/slc9c1

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