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Gene

PTCSC3

papillary thyroid carcinoma susceptibility candidate 3

Summary

Cytogenetic location
14q13.3
Coordinates
Chromosome 14: 36,134,890–36,176,722 (GRCh38)
Exons
4 exons across 41.8 kb
MANE Select transcript
ENST00000556013.4NR_049735.3
Locus type
Long non-coding RNA (lncRNA)

Curated reports relevant to this gene

No Genome Test report reads PTCSC3 yet. The test sequences your whole genome, so your data includes it all the same.

How PTCSC3 is laid out

  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 14, with a bracket where PTCSC3 sits. PTCSC3 and 6 genes near it on chromosome 14, from 35,655,806 to 36,655,805.Chromosome 1414q13.3p13p12p11.2p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.11q32.12q32.13q32.2q32.31q32.32q32.3335.8 Mb36 Mb36.2 Mb36.4 Mb36.6 MbRALGAPA1: 35,538,352–35,809,325, reverse strandRALGAPA1BRMS1L: 35,826,299–35,932,325, forward strandBRMS1LPTCSC3: 36,134,890–36,176,722, reverse strandPTCSC3MBIP: 36,298,231–36,320,680, reverse strandMBIPSFTA3: 36,473,207–36,521,149, reverse strandSFTA3NKX2-1: 36,516,392–36,521,149, reverse strandNKX2-1NKX2-8: 36,580,004–36,582,614, reverse strandNKX2-8Diagram of PTCSC3: 4 exons on the reverse strand of chromosome 14Exon 4: 36,134,890–36,136,356, 1,467 basesExon 3: 36,153,804–36,153,894, 91 basesExon 2: 36,162,624–36,162,683, 60 basesExon 1: 36,176,298–36,176,722, 425 bases43215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2 kb of the gene's 41.8 kb.

Sequencing PTCSC3

3Easy

How hard PTCSC3 is to sequence with short reads, out of 100

Almost all of PTCSC3's exons sit where short reads map cleanly.

What adds to it: the share of PTCSC3's exons in each kind of hard region

  • Mappability1.4%
  • Homology0%
  • Shared with chrY0%
  • Reference coverage0%
  • Repeats6.3%
  • GC content1.4%

A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scored

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). PTCSC3 gene: papillary thyroid carcinoma susceptibility candidate 3. Retrieved 20 October 2026, from https://dantelabs.com/genes/ptcsc3

Vancouver

Dante Labs. PTCSC3 gene: papillary thyroid carcinoma susceptibility candidate 3 [Internet]. [cited 20 October 2026]. Available from: https://dantelabs.com/genes/ptcsc3

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