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Gene

PRPF39

pre-mRNA processing factor 39

Summary

Cytogenetic location
14q21.2
Coordinates
Chromosome 14: 45,084,116–45,116,282 (GRCh38)
Exons
14 exons across 32.2 kb
Protein
669 amino acids
Also known as
FLJ20666, FLJ11128
MANE Select transcript
ENST00000355765.11NM_017922.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PRPF39 yet. The test sequences your whole genome, so your data includes it all the same.

How PRPF39 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 14, with a bracket where PRPF39 sits. PRPF39 and 6 genes near it on chromosome 14, from 44,600,199 to 45,600,198.Chromosome 1414q21.2p13p12p11.2p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.11q32.12q32.13q32.2q32.31q32.32q32.3344.8 Mb45 Mb45.2 Mb45.4 Mb45.6 MbDORIP1: 44,897,200–44,907,257, forward strandDORIP1KLHL28: 44,924,324–45,042,322, reverse strandKLHL28TOGARAM1: 44,962,183–45,074,431, forward strandTOGARAM1PRPF39: 45,084,116–45,116,282, forward strandPRPF39FKBP3: 45,112,188–45,135,319, reverse strandFKBP3FANCM: 45,135,909–45,200,890, forward strandFANCMMIS18BP1: 45,203,125–45,253,542, reverse strandMIS18BP1Diagram of PRPF39: 14 exons on the forward strand of chromosome 14Exon 1: 45,084,116–45,084,249, 134 basesExon 2: 45,095,221–45,095,563, 343 basesExon 3: 45,096,103–45,096,228, 126 basesExon 4: 45,096,887–45,097,005, 119 basesExon 5: 45,102,529–45,102,696, 168 basesExon 6: 45,107,451–45,107,616, 166 basesExon 7: 45,108,415–45,108,522, 108 basesExon 8: 45,109,616–45,109,780, 165 basesExon 9: 45,110,094–45,110,220, 127 basesExon 10: 45,110,549–45,110,817, 269 basesExon 11: 45,112,318–45,112,502, 185 basesExon 12: 45,114,183–45,114,257, 75 basesExon 13: 45,114,494–45,114,614, 121 basesExon 14: 45,114,857–45,116,282, 1,426 bases124681012145′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.5 kb of the gene's 32.2 kb; 2,010 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PRPF39 gene: pre-mRNA processing factor 39. Retrieved 17 October 2026, from https://dantelabs.com/genes/prpf39

Vancouver

Dante Labs. PRPF39 gene: pre-mRNA processing factor 39 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/prpf39

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