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Gene

PITHD1

PITH domain containing 1

Summary

Cytogenetic location
1p36.11
Coordinates
Chromosome 1: 23,778,418–23,788,232 (GRCh38)
Exons
6 exons across 9.8 kb
Protein
211 amino acids
Also known as
HT014, TXNL1CL
Previous symbols
C1orf128
MANE Select transcript
ENST00000246151.9NM_020362.5
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads PITHD1 yet. The test sequences your whole genome, so your data includes it all the same.

How PITHD1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where PITHD1 sits. PITHD1 and 19 genes near it on chromosome 1, from 23,283,325 to 24,283,324.Chromosome 11p36.11p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q4423.4 Mb23.6 Mb23.8 Mb24 Mb24.2 MbHNRNPR: 23,303,771–23,344,658, reverse strandHNRNPRZNF436: 23,359,448–23,369,960, reverse strandZNF436TCEA3: 23,370,591–23,425,169, reverse strandTCEA3ASAP3: 23,428,560–23,484,637, reverse strandASAP3E2F2: 23,506,423–23,531,241, reverse strandE2F2ID3: 23,557,440–23,560,586, reverse strandID3RPL11: 23,691,685–23,698,426, forward strandRPL11ELOA: 23,743,153–23,762,059, forward strandELOAPITHD1: 23,778,418–23,788,232, forward strandPITHD1LYPLA2: 23,791,110–23,795,545, forward strandLYPLA2GALE: 23,795,599–23,800,804, reverse strandGALEHMGCL: 23,801,877–23,838,620, reverse strandHMGCLFUCA1: 23,845,077–23,868,361, reverse strandFUCA1CNR2: 23,870,515–23,913,396, reverse strandCNR2PNRC2: 23,956,839–23,963,776, forward strandPNRC2SRSF10: 23,962,474–23,980,927, reverse strandSRSF10MYOM3: 24,054,822–24,112,190, reverse strandMYOM3IL22RA1: 24,119,769–24,143,301, reverse strandIL22RA1IFNLR1: 24,154,168–24,187,959, reverse strandIFNLR1GRHL3: 24,199,558–24,364,482, forward strandGRHL3Diagram of PITHD1: 6 exons on the forward strand of chromosome 1Exon 1: 23,778,418–23,778,713, 296 basesExon 2: 23,779,438–23,779,481, 44 basesExon 3: 23,779,864–23,779,941, 78 basesExon 4: 23,785,675–23,785,779, 105 basesExon 5: 23,786,315–23,786,423, 109 basesExon 6: 23,787,275–23,788,232, 958 bases1234565′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.6 kb of the gene's 9.8 kb; 636 of those bases code for the protein.

Sequencing PITHD1

3Easy

How hard PITHD1 is to sequence with short reads, out of 100

Almost all of PITHD1's exons sit where short reads map cleanly.

What adds to it: the share of PITHD1's exons in each kind of hard region

  • Mappability0%
  • Homology0%
  • Repeats5%
  • GC content19%
  • Reference coverage0%

A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scored

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). PITHD1 gene: PITH domain containing 1. Retrieved 18 October 2026, from https://dantelabs.com/genes/pithd1

Vancouver

Dante Labs. PITHD1 gene: PITH domain containing 1 [Internet]. [cited 18 October 2026]. Available from: https://dantelabs.com/genes/pithd1

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