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Gene

EFCAB3

EF-hand calcium binding domain 3

Summary

Cytogenetic location
17q23.2
Coordinates
Chromosome 17: 62,380,553–62,416,480 (GRCh38)
Exons
10 exons across 35.9 kb
Protein
438 amino acids
Also known as
FLJ25818
MANE Select transcript
ENST00000305286.8NM_173503.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads EFCAB3 yet. The test sequences your whole genome, so your data includes it all the same.

How EFCAB3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 17, with a bracket where EFCAB3 sits. EFCAB3 and 6 genes near it on chromosome 17, from 61,898,517 to 62,898,516.Chromosome 1717q23.2p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.362 Mb62.2 Mb62.4 Mb62.6 Mb62.8 MbINTS2: 61,865,367–61,928,016, reverse strandINTS2MED13: 61,942,546–62,065,365, reverse strandMED13EFCAB3: 62,380,553–62,416,480, forward strandEFCAB3METTL2A: 62,423,866–62,453,385, forward strandMETTL2ATLK2: 62,458,658–62,615,481, forward strandTLK2MRC2: 62,627,417–62,693,597, forward strandMRC2MARCHF10: 62,701,314–62,808,344, reverse strandMARCHF10Diagram of EFCAB3: 10 exons on the forward strand of chromosome 17Exon 1: 62,380,553–62,380,613, 61 basesExon 2: 62,382,963–62,383,053, 91 basesExon 3: 62,387,340–62,387,416, 77 basesExon 4: 62,391,822–62,391,965, 144 basesExon 5: 62,393,573–62,393,644, 72 basesExon 6: 62,395,068–62,395,188, 121 basesExon 7: 62,406,480–62,406,673, 194 basesExon 8: 62,407,028–62,407,212, 185 basesExon 9: 62,413,732–62,413,854, 123 basesExon 10: 62,416,003–62,416,480, 478 bases12468105′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.5 kb of the gene's 35.9 kb; 1,317 of those bases code for the protein.

Sequencing EFCAB3

23Moderate

How hard EFCAB3 is to sequence with short reads, out of 100

  • Mappability32%
  • Homology39%
  • Repeats0.2%
  • GC content2.7%
  • Reference coverage0%

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). EFCAB3 gene: EF-hand calcium binding domain 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/efcab3

Vancouver

Dante Labs. EFCAB3 gene: EF-hand calcium binding domain 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/efcab3

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