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Gene

CNTN5

contactin 5

Summary

Cytogenetic location
11q22.1
Coordinates
Chromosome 11: 99,020,949–100,358,885 (GRCh38)
Exons
25 exons across 1,337.9 kb
Protein
1,100 amino acids
Also known as
NB-2, hNB-2
MANE Select transcript
ENST00000524871.6NM_014361.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CNTN5 yet. The test sequences your whole genome, so your data includes it all the same.

How CNTN5 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 11, with a bracket where CNTN5 sits. CNTN5 and 3 genes near it on chromosome 11, from 97,683,012 to 101,696,822.Chromosome 1111q22.1p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2598 Mb98.5 Mb99 Mb99.5 Mb100 Mb100.5 Mb101 Mb101.5 MbCNTN5: 99,020,949–100,358,885, forward strandCNTN5ARHGAP42: 100,687,164–100,993,941, forward strandARHGAP42PGR: 101,029,624–101,129,817, reverse strandPGRTRPC6: 101,447,437–101,872,562, reverse strandTRPC6Diagram of CNTN5: 25 exons on the forward strand of chromosome 11Exon 1: 99,020,949–99,021,270, 322 basesExon 2: 99,325,346–99,325,484, 139 basesExon 3: 99,556,145–99,556,269, 125 basesExon 4: 99,819,544–99,819,765, 222 basesExon 5: 99,844,852–99,844,975, 124 basesExon 6: 99,845,087–99,845,262, 176 basesExon 7: 99,916,054–99,916,149, 96 basesExon 8: 99,956,806–99,957,009, 204 basesExon 9: 100,002,034–100,002,136, 103 basesExon 10: 100,061,212–100,061,393, 182 basesExon 11: 100,070,424–100,070,560, 137 basesExon 12: 100,071,705–100,071,834, 130 basesExon 13: 100,074,144–100,074,294, 151 basesExon 14: 100,191,126–100,191,253, 128 basesExon 15: 100,193,488–100,193,663, 176 basesExon 16: 100,224,692–100,224,812, 121 basesExon 17: 100,255,760–100,255,918, 159 basesExon 18: 100,271,092–100,271,241, 150 basesExon 19: 100,297,625–100,297,695, 71 basesExon 20: 100,299,162–100,299,396, 235 basesExon 21: 100,308,359–100,308,468, 110 basesExon 22: 100,340,463–100,340,649, 187 basesExon 23: 100,341,093–100,341,205, 113 basesExon 24: 100,350,702–100,350,870, 169 basesExon 25: 100,356,117–100,358,885, 2,769 bases15101520255′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.5 kb of the gene's 1,337.9 kb; 3,303 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CNTN5 gene: contactin 5. Retrieved 17 October 2026, from https://dantelabs.com/genes/cntn5

Vancouver

Dante Labs. CNTN5 gene: contactin 5 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cntn5

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