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Gene

CDK16

cyclin dependent kinase 16

Summary

Cytogenetic location
Xp11.3
Coordinates
Chromosome X: 47,218,681–47,229,997 (GRCh38)
Exons
16 exons across 11.3 kb
Protein
496 amino acids
Also known as
PCTAIRE, PCTAIRE1, PCTGAIRE, FLJ16665
Previous symbols
PCTK1
MANE Select transcript
ENST00000357227.9NM_006201.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CDK16 yet. The test sequences your whole genome, so your data includes it all the same.

How CDK16 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome X, with a bracket where CDK16 sits. CDK16 and 16 genes near it on chromosome X, from 46,724,339 to 47,724,338.Chromosome XXp11.3p22.33p22.32p22.31p22.2p22.13p22.12p22.11p21.3p21.2p21.1p11.4p11.3p11.23p11.22p11.21p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.31q21.32q21.33q22.1q22.2q22.3q23q24q25q26.1q26.2q26.3q27.1q27.2q27.3q2846.8 Mb47 Mb47.2 Mb47.4 Mb47.6 MbSLC9A7: 46,599,251–46,759,215, reverse strandSLC9A7RP2: 46,836,922–46,889,240, forward strandRP2JADE3: 46,912,276–47,061,242, forward strandJADE3RGN: 47,061,388–47,096,431, forward strandRGNNDUFB11: 47,142,071–47,145,507, reverse strandNDUFB11RBM10: 47,144,284–47,186,814, forward strandRBM10UBA1: 47,190,713–47,215,173, forward strandUBA1CDK16: 47,218,681–47,229,997, forward strandCDK16USP11: 47,232,866–47,248,328, forward strandUSP11ZNF157: 47,366,479–47,414,624, forward strandZNF157ZNF41: 47,444,693–47,483,247, reverse strandZNF41ARAF: 47,561,043–47,571,921, forward strandARAFSYN1: 47,571,890–47,619,970, reverse strandSYN1TIMP1: 47,582,227–47,586,793, forward strandTIMP1CFP: 47,621,537–47,630,305, reverse strandCFPELK1: 47,631,617–47,650,604, reverse strandELK1UXT: 47,651,792–47,659,301, reverse strandUXTDiagram of CDK16: 16 exons on the forward strand of chromosome XExon 2: 1 known disease-causing siteExon 1: 47,218,681–47,219,105, 425 basesExon 2: 47,223,552–47,223,759, 208 basesExon 3: 47,224,385–47,224,518, 134 basesExon 4: 47,224,618–47,224,743, 126 basesExon 5: 47,224,834–47,224,890, 57 basesExon 6: 47,224,988–47,225,102, 115 basesExon 7: 47,225,772–47,225,866, 95 basesExon 8: 47,225,965–47,226,027, 63 basesExon 9: 47,226,279–47,226,402, 124 basesExon 10: 47,226,583–47,226,703, 121 basesExon 11: 47,226,812–47,226,909, 98 basesExon 12: 47,226,994–47,227,099, 106 basesExon 13: 47,227,181–47,227,223, 43 basesExon 14: 47,227,379–47,227,469, 91 basesExon 15: 47,228,567–47,228,644, 78 basesExon 16: 47,228,731–47,229,997, 1,267 bases12468101214165′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.2 kb of the gene's 11.3 kb; 1,491 of those bases code for the protein.

How a genome test reads CDK16

1

position in CDK16 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 11.3 kb of CDK16, introns included, not only the 3.2 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). CDK16 gene: cyclin dependent kinase 16. Retrieved 17 October 2026, from https://dantelabs.com/genes/cdk16

Vancouver

Dante Labs. CDK16 gene: cyclin dependent kinase 16 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cdk16

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