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Gene

ZNF404

zinc finger protein 404

Summary

Cytogenetic location
19q13.31
Coordinates
Chromosome 19: 43,872,365–43,883,964 (GRCh38)
Exons
3 exons across 11.6 kb
Protein
552 amino acids
MANE Select transcript
ENST00000587539.2NM_001033719.3
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads ZNF404 yet. The test sequences your whole genome, so your data includes it all the same.

How ZNF404 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where ZNF404 sits. ZNF404 and 36 genes near it on chromosome 19, from 43,378,165 to 44,378,164.Chromosome 1919q13.31p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4343.4 Mb43.6 Mb43.8 Mb44 Mb44.2 MbTEX101: 43,401,496–43,418,613, forward strandTEX101LYPD3: 43,460,787–43,465,608, reverse strandLYPD3PHLDB3: 43,473,625–43,505,301, reverse strandPHLDB3ETHE1: 43,506,713–43,527,259, reverse strandETHE1ZNF575: 43,525,497–43,541,813, forward strandZNF575XRCC1: 43,543,306–43,580,473, reverse strand: 43,554,692–43,593,036, reverse strandPINLYP: 43,575,801–43,583,964, forward strandIRGQ: 43,584,367–43,596,150, reverse strandZNF576: 43,593,805–43,601,189, forward strandZNF576SRRM5: 43,596,617–43,614,498, forward strandSRRM5ZNF428: 43,607,223–43,619,914, reverse strandZNF428CADM4: 43,622,055–43,639,858, reverse strandCADM4PLAUR: 43,645,672–43,670,547, reverse strandPLAURIRGC: 43,716,076–43,720,021, forward strandIRGCSMG9: 43,727,983–43,755,605, reverse strandSMG9KCNN4: 43,766,517–43,781,262, reverse strandKCNN4LYPD5: 43,785,874–43,827,206, reverse strandLYPD5ZNF283: 43,827,297–43,852,017, forward strandZNF283ZNF404: 43,872,365–43,883,964, reverse strandZNF404ZNF45: 43,910,549–43,935,306, reverse strandZNF45ZNF221: 43,951,204–43,972,739, forward strandZNF221ZNF155: 43,967,862–43,998,326, forward strandZNF155ZNF230: 44,002,934–44,013,924, forward strandZNF230ZNF222: 44,025,326–44,033,222, forward strandZNF222: 44,025,354–44,087,318, forward strandZNF223: 44,051,367–44,069,308, forward strandZNF223ZNF284: 44,072,138–44,089,613, forward strandZNF284ZNF224: 44,094,326–44,111,682, forward strandZNF224ZNF225: 44,112,181–44,135,473, forward strandZNF225ZNF234: 44,141,355–44,160,839, forward strandZNF234ZNF226: 44,165,069–44,178,381, forward strandZNF226ZNF227: 44,207,475–44,238,179, forward strandZNF227ZNF235: 44,228,729–44,305,046, reverse strandZNF235ZNF233: 44,259,863–44,277,043, forward strandZNF233ZNF112: 44,307,664–44,367,217, reverse strandZNF112: 44,329,695–44,401,608, reverse strandDiagram of ZNF404: 3 exons on the reverse strand of chromosome 19Exon 3: 43,872,365–43,874,077, 1,713 basesExon 2: 43,880,010–43,880,136, 127 basesExon 1: 43,883,956–43,883,964, 9 bases3215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.8 kb of the gene's 11.6 kb; 1,659 of those bases code for the protein.

Sequencing ZNF404

2Low

How hard ZNF404 is to sequence with short reads, out of 100

  • Mappability0%
  • Homology0%
  • Repeats13%
  • GC content0%
  • Reference coverage0%

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). ZNF404 gene: zinc finger protein 404. Retrieved 17 October 2026, from https://dantelabs.com/genes/znf404

Vancouver

Dante Labs. ZNF404 gene: zinc finger protein 404 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/znf404

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