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Gene

ZC3HAV1

zinc finger CCCH-type containing, antiviral 1

Summary

Cytogenetic location
7q34
Coordinates
Chromosome 7: 139,043,515–139,109,720 (GRCh38)
Exons
13 exons across 66.2 kb
Protein
902 amino acids
Also known as
ZAP, FLB6421, FLJ13288, MGC48898, ZC3HDC2, ZC3H2, PARP13, ARTD13
MANE Select transcript
ENST00000242351.10NM_020119.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads ZC3HAV1 yet. The test sequences your whole genome, so your data includes it all the same.

How ZC3HAV1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 7, with a bracket where ZC3HAV1 sits. ZC3HAV1 and 14 genes near it on chromosome 7, from 138,576,618 to 139,576,617.Chromosome 77q34p22.3p22.2p22.1p21.3p21.2p21.1p15.3p15.2p15.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.21q11.22q11.23q21.11q21.12q21.13q21.2q21.3q22.1q22.2q22.3q31.1q31.2q31.31q31.32q31.33q32.1q32.2q32.3q33q34q35q36.1q36.2q36.3138.6 Mb138.8 Mb139 Mb139.2 Mb139.4 MbTRIM24: 138,460,193–138,590,023, forward strandTRIM24SVOPL: 138,594,285–138,701,382, reverse strandSVOPLATP6V0A4: 138,706,289–138,799,672, reverse strandATP6V0A4TMEM213: 138,797,952–138,838,711, forward strandTMEM213KIAA1549: 138,831,381–138,982,084, reverse strandKIAA1549ZC3HAV1L: 139,021,498–139,036,219, reverse strandZC3HAV1LZC3HAV1: 139,043,515–139,109,720, reverse strandZC3HAV1IFT56: 139,133,744–139,191,986, forward strandIFT56UBN2: 139,230,356–139,330,427, forward strandUBN2FMC1: 139,339,457–139,347,031, forward strandFMC1LUC7L2: 139,340,359–139,425,496, forward strandLUC7L2FMC1-LUC7L2: 139,341,360–139,422,599, forward strandFMC1-LUC7L2KLRG2: 139,450,625–139,483,719, reverse strandKLRG2CLEC2L: 139,523,668–139,544,985, forward strandCLEC2LHIPK2: 139,561,570–139,778,016, reverse strandHIPK2Diagram of ZC3HAV1: 13 exons on the reverse strand of chromosome 7Exon 13: 139,043,515–139,047,853, 4,339 basesExon 12: 139,053,451–139,053,581, 131 basesExon 11: 139,053,965–139,054,095, 131 basesExon 10: 139,055,205–139,055,295, 91 basesExon 9: 139,061,036–139,061,138, 103 basesExon 8: 139,064,879–139,064,999, 121 basesExon 7: 139,073,856–139,074,030, 175 basesExon 6: 139,076,286–139,076,409, 124 basesExon 5: 139,078,552–139,078,653, 102 basesExon 4: 139,079,470–139,080,243, 774 basesExon 3: 139,083,780–139,084,032, 253 basesExon 2: 139,089,624–139,089,759, 136 basesExon 1: 139,109,024–139,109,720, 697 bases131210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 7.2 kb of the gene's 66.2 kb; 2,709 of those bases code for the protein.

Sequencing ZC3HAV1

2Easy

How hard ZC3HAV1 is to sequence with short reads, out of 100

Almost all of ZC3HAV1's exons sit where short reads map cleanly.

What adds to it: the share of ZC3HAV1's exons in each kind of hard region

  • Mappability0.1%
  • Homology0%
  • Shared with chrY0%
  • Reference coverage0%
  • Repeats3.1%
  • GC content5.7%

A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scored

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). ZC3HAV1 gene: zinc finger CCCH-type containing, antiviral 1. Retrieved 19 October 2026, from https://dantelabs.com/genes/zc3hav1

Vancouver

Dante Labs. ZC3HAV1 gene: zinc finger CCCH-type containing, antiviral 1 [Internet]. [cited 19 October 2026]. Available from: https://dantelabs.com/genes/zc3hav1

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