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Gene

TRERF1

transcriptional regulating factor 1

Summary

Cytogenetic location
6p21.1
Coordinates
Chromosome 6: 42,224,931–42,451,926 (GRCh38)
Exons
18 exons across 227 kb
Protein
1,212 amino acids
Also known as
TReP-132, HSA277276, RAPA, dJ139D8.5
Previous symbols
BCAR2
MANE Select transcript
ENST00000695948.1NM_001395490.1
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads TRERF1 yet. The test sequences your whole genome, so your data includes it all the same.

How TRERF1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 6, with a bracket where TRERF1 sits. TRERF1 and 17 genes near it on chromosome 6, from 41,838,429 to 42,838,428.Chromosome 66p21.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q2742 Mb42.2 Mb42.4 Mb42.6 Mb42.8 MbTOMM6: 41,787,620–41,872,570, forward strandTOMM6USP49: 41,789,896–41,895,395, reverse strandUSP49: 41,793,314–41,921,139, reverse strandMED20: 41,905,331–41,921,147, reverse strandMED20BYSL: 41,921,229–41,934,602, forward strandBYSLCCND3: 41,934,577–42,050,357, reverse strandCCND3TAF8: 42,050,513–42,087,461, forward strandTAF8C6orf132: 42,092,233–42,142,620, reverse strandC6orf132CIMIP3: 42,142,693–42,163,418, forward strandGUCA1ANB-GUCA1A: 42,155,406–42,180,056, forward strandGUCA1ANB-GUCA1AGUCA1A: 42,173,364–42,181,338, forward strandGUCA1AGUCA1B: 42,183,284–42,194,956, reverse strandGUCA1BMRPS10: 42,205,717–42,217,881, reverse strandMRPS10TRERF1: 42,224,931–42,451,926, reverse strandTRERF1UBR2: 42,563,969–42,693,505, forward strandUBR2PRPH2: 42,696,598–42,722,621, reverse strandPRPH2TBCC: 42,744,498–42,746,103, reverse strandTBCCBICRAL: 42,781,931–42,868,560, forward strandBICRALDiagram of TRERF1: 18 exons on the reverse strand of chromosome 6Exon 18: 42,224,931–42,228,669, 3,739 basesExon 17: 42,232,681–42,232,928, 248 basesExon 16: 42,236,205–42,236,411, 207 basesExon 15: 42,243,248–42,243,361, 114 basesExon 14: 42,246,456–42,246,544, 89 basesExon 13: 42,254,851–42,254,926, 76 basesExon 12: 42,256,728–42,256,831, 104 basesExon 11: 42,256,963–42,257,102, 140 basesExon 10: 42,258,135–42,258,201, 67 basesExon 9: 42,259,339–42,259,723, 385 basesExon 8: 42,263,320–42,263,568, 249 basesExon 7: 42,264,704–42,264,854, 151 basesExon 6: 42,265,751–42,265,797, 47 basesExon 5: 42,268,154–42,269,848, 1,695 basesExon 4: 42,300,638–42,300,749, 112 basesExon 3: 42,362,997–42,363,079, 83 basesExon 2: 42,451,177–42,451,261, 85 basesExon 1: 42,451,674–42,451,926, 253 bases181510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 7.8 kb of the gene's 227 kb; 3,639 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). TRERF1 gene: transcriptional regulating factor 1. Retrieved 19 October 2026, from https://dantelabs.com/genes/trerf1

Vancouver

Dante Labs. TRERF1 gene: transcriptional regulating factor 1 [Internet]. [cited 19 October 2026]. Available from: https://dantelabs.com/genes/trerf1

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