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Gene

SYNPO

synaptopodin

Summary

Cytogenetic location
5q33.1
Coordinates
Chromosome 5: 150,640,660–150,659,207 (GRCh38)
Exons
3 exons across 18.5 kb
Protein
903 amino acids
Also known as
KIAA1029, SYNPO1
MANE Select transcript
ENST00000307662.5NM_007286.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SYNPO yet. The test sequences your whole genome, so your data includes it all the same.

How SYNPO is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 5, with a bracket where SYNPO sits. SYNPO and 18 genes near it on chromosome 5, from 150,149,934 to 151,149,933.Chromosome 55q33.1p15.33p15.32p15.31p15.2p15.1p14.3p14.2p14.1p13.3p13.2p13.1p12p11q11.1q11.2q12.1q12.2q12.3q13.1q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q31.1q31.2q31.3q32q33.1q33.2q33.3q34q35.1q35.2q35.3150.2 Mb150.4 Mb150.6 Mb150.8 Mb151 MbPDGFRB: 150,113,839–150,186,363, reverse strandPDGFRBCDX1: 150,166,772–150,186,162, forward strandCDX1SLC6A7: 150,190,041–150,222,788, forward strandSLC6A7CAMK2A: 150,219,491–150,290,324, reverse strandCAMK2AARSI: 150,296,343–150,339,307, reverse strandARSITCOF1: 150,357,629–150,400,510, forward strandTCOF1CD74: 150,401,637–150,412,969, reverse strandCD74RPS14: 150,429,756–150,449,952, reverse strandRPS14NDST1: 150,485,405–150,558,211, forward strandNDST1SYNPO: 150,640,660–150,659,207, forward strandSYNPOMYOZ3: 150,660,450–150,680,022, forward strandMYOZ3RBM22: 150,690,790–150,701,097, reverse strandRBM22DCTN4: 150,706,840–150,759,095, reverse strandDCTN4SMIM3: 150,777,883–150,796,736, forward strandSMIM3IRGM: 150,846,521–150,900,736, forward strandIRGMZNF300: 150,893,804–150,904,987, reverse strandZNF300GPX3: 151,020,585–151,030,769, forward strandGPX3TNIP1: 151,029,935–151,093,577, reverse strandTNIP1ANXA6: 151,100,706–151,157,979, reverse strandANXA6Diagram of SYNPO: 3 exons on the forward strand of chromosome 5Exon 1: 150,640,660–150,640,854, 195 basesExon 2: 150,647,944–150,650,303, 2,360 basesExon 3: 150,656,404–150,659,207, 2,804 bases1235′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.4 kb of the gene's 18.5 kb; 2,712 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SYNPO gene: synaptopodin. Retrieved 17 October 2026, from https://dantelabs.com/genes/synpo

Vancouver

Dante Labs. SYNPO gene: synaptopodin [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/synpo

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