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Gene

SPNS3

SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)

Summary

Cytogenetic location
17p13.2
Coordinates
Chromosome 17: 4,433,940–4,488,204 (GRCh38)
Exons
12 exons across 54.3 kb
Protein
512 amino acids
Also known as
MGC29671, SLC63A3
MANE Select transcript
ENST00000355530.7NM_182538.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SPNS3 yet. The test sequences your whole genome, so your data includes it all the same.

How SPNS3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 17, with a bracket where SPNS3 sits. SPNS3 and 30 genes near it on chromosome 17, from 3,961,072 to 4,961,071.Chromosome 1717p13.2p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.34 Mb4.2 Mb4.4 Mb4.6 Mb4.8 MbATP2A3: 3,923,866–3,964,499, reverse strandATP2A3ZZEF1: 4,004,432–4,143,628, reverse strandZZEF1CYB5D2: 4,143,168–4,188,683, forward strandCYB5D2ANKFY1: 4,163,821–4,263,995, reverse strandANKFY1UBE2G1: 4,269,221–4,366,678, reverse strandUBE2G1SPNS3: 4,433,940–4,488,204, forward strandSPNS3SPNS2: 4,498,839–4,539,036, forward strandSPNS2MYBBP1A: 4,538,897–4,555,403, reverse strandMYBBP1AGGT6: 4,556,342–4,560,818, reverse strandGGT6SMTNL2: 4,583,999–4,608,798, forward strandSMTNL2ALOX15: 4,629,736–4,642,294, reverse strandALOX15PELP1: 4,669,774–4,704,337, reverse strandPELP1ARRB2: 4,710,393–4,721,500, forward strandARRB2MED11: 4,731,411–4,733,610, forward strandMED11CXCL16: 4,732,915–4,740,064, reverse strandCXCL16ZMYND15: 4,739,108–4,746,119, forward strandTM4SF5: 4,771,835–4,783,220, forward strandTM4SF5VMO1: 4,785,281–4,790,406, reverse strandVMO1GLTPD2: 4,788,927–4,790,734, forward strandGLTPD2PSMB6: 4,796,144–4,798,503, forward strandPSMB6C17orf114: 4,801,159–4,807,013, reverse strandPLD2: 4,807,074–4,823,434, forward strandMINK1: 4,833,147–4,898,065, forward strandMINK1CHRNE: 4,897,769–4,934,438, reverse strandCHRNEC17orf107: 4,899,418–4,902,934, forward strandC17orf107GP1BA: 4,932,261–4,935,023, forward strandGP1BASLC25A11: 4,934,570–4,940,156, reverse strandSLC25A11RNF167: 4,939,997–4,945,223, forward strandPFN1: 4,945,652–4,950,517, reverse strandENO3: 4,948,034–4,957,132, forward strandSPAG7: 4,959,226–4,967,835, reverse strandDiagram of SPNS3: 12 exons on the forward strand of chromosome 17Exon 1: 4,433,940–4,434,166, 227 basesExon 2: 4,439,658–4,439,723, 66 basesExon 3: 4,445,032–4,445,168, 137 basesExon 4: 4,446,048–4,446,199, 152 basesExon 5: 4,446,896–4,446,962, 67 basesExon 6: 4,448,155–4,448,303, 149 basesExon 7: 4,449,235–4,449,387, 153 basesExon 8: 4,453,016–4,453,205, 190 basesExon 9: 4,478,572–4,478,637, 66 basesExon 10: 4,486,228–4,486,326, 99 basesExon 11: 4,486,412–4,486,583, 172 basesExon 12: 4,487,806–4,488,204, 399 bases1246810125′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.9 kb of the gene's 54.3 kb; 1,539 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SPNS3 gene: SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative). Retrieved 17 October 2026, from https://dantelabs.com/genes/spns3

Vancouver

Dante Labs. SPNS3 gene: SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/spns3

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