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Gene

SH3TC1

SH3 domain and tetratricopeptide repeats 1

Summary

Cytogenetic location
4p16.1
Coordinates
Chromosome 4: 8,199,290–8,241,103 (GRCh38)
Exons
18 exons across 41.8 kb
Protein
1,336 amino acids
Also known as
FLJ20356
MANE Select transcript
ENST00000245105.8NM_018986.5
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SH3TC1 yet. The test sequences your whole genome, so your data includes it all the same.

How SH3TC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 4, with a bracket where SH3TC1 sits. SH3TC1 and 8 genes near it on chromosome 4, from 7,720,197 to 8,720,196.Chromosome 44p16.1p16.3p16.2p16.1p15.33p15.32p15.31p15.2p15.1p14p13p12p11q11q12q13.1q13.2q13.3q21.1q21.21q21.22q21.23q21.3q22.1q22.2q22.3q23q24q25q26q27q28.1q28.2q28.3q31.1q31.21q31.22q31.23q31.3q32.1q32.2q32.3q33q34.1q34.2q34.3q35.1q35.27.8 Mb8 Mb8.2 Mb8.4 Mb8.6 MbSORCS2: 7,192,538–7,743,642, forward strandSORCS2AFAP1: 7,758,713–7,939,926, reverse strandAFAP1ABLIM2: 7,965,310–8,158,832, reverse strandABLIM2SH3TC1: 8,199,290–8,241,103, forward strandSH3TC1HTRA3: 8,269,732–8,307,118, forward strandHTRA3ACOX3: 8,364,703–8,440,750, reverse strandACOX3TRMT44: 8,436,140–8,496,273, forward strandTRMT44GPR78: 8,558,725–8,619,761, forward strandGPR78CPZ: 8,592,638–8,619,761, forward strandCPZDiagram of SH3TC1: 18 exons on the forward strand of chromosome 4Exon 1: 8,199,290–8,199,405, 116 basesExon 2: 8,205,167–8,205,366, 200 basesExon 3: 8,209,748–8,209,822, 75 basesExon 4: 8,212,701–8,212,828, 128 basesExon 5: 8,214,475–8,214,580, 106 basesExon 6: 8,216,111–8,216,257, 147 basesExon 7: 8,216,957–8,217,167, 211 basesExon 8: 8,218,271–8,218,347, 77 basesExon 9: 8,219,335–8,219,530, 196 basesExon 10: 8,222,840–8,222,970, 131 basesExon 11: 8,225,175–8,225,216, 42 basesExon 12: 8,226,980–8,228,644, 1,665 basesExon 13: 8,231,976–8,232,156, 181 basesExon 14: 8,233,363–8,233,513, 151 basesExon 15: 8,235,433–8,235,555, 123 basesExon 16: 8,236,278–8,236,428, 151 basesExon 17: 8,237,474–8,237,670, 197 basesExon 18: 8,240,698–8,241,103, 406 bases1246810121416185′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.3 kb of the gene's 41.8 kb; 4,011 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SH3TC1 gene: SH3 domain and tetratricopeptide repeats 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/sh3tc1

Vancouver

Dante Labs. SH3TC1 gene: SH3 domain and tetratricopeptide repeats 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/sh3tc1

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