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Gene

SETDB2

SET domain bifurcated histone lysine methyltransferase 2

Summary

Cytogenetic location
13q14.2
Coordinates
Chromosome 13: 49,444,274–49,495,003 (GRCh38)
Exons
14 exons across 50.7 kb
Protein
707 amino acids
Also known as
CLLD8, CLLL8, KMT1F
Previous symbols
C13orf4
MANE Select transcript
ENST00000611815.2NM_001160308.3
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SETDB2 yet. The test sequences your whole genome, so your data includes it all the same.

How SETDB2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 13, with a bracket where SETDB2 sits. SETDB2 and 11 genes near it on chromosome 13, from 48,969,639 to 49,969,638.Chromosome 1313q14.2p13p12p11.2p11.1q11q12.11q12.12q12.13q12.2q12.3q13.1q13.2q13.3q14.11q14.12q14.13q14.2q14.3q21.1q21.2q21.31q21.32q21.33q22.1q22.2q22.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q3449 Mb49.2 Mb49.4 Mb49.6 Mb49.8 MbFNDC3A: 48,975,793–49,209,779, forward strandFNDC3AMLNR: 49,220,118–49,225,201, forward strandMLNRCDADC1: 49,247,863–49,293,490, forward strandCDADC1CAB39L: 49,308,629–49,444,342, reverse strandCAB39LSETDB2: 49,444,274–49,495,003, forward strandSETDB2PHF11: 49,495,095–49,528,989, forward strandPHF11RCBTB1: 49,531,939–49,586,740, reverse strandRCBTB1ARL11: 49,628,464–49,634,842, forward strandARL11EBPL: 49,660,674–49,691,613, reverse strandEBPLKPNA3: 49,697,744–49,793,068, reverse strandKPNA3SPRYD7: 49,912,702–49,936,513, reverse strandSPRYD7TRIM13: 49,935,920–50,020,481, forward strandTRIM13Diagram of SETDB2: 14 exons on the forward strand of chromosome 13Exon 1: 49,444,274–49,444,857, 584 basesExon 2: 49,451,553–49,451,909, 357 basesExon 3: 49,460,107–49,460,232, 126 basesExon 4: 49,461,097–49,461,162, 66 basesExon 5: 49,467,864–49,467,960, 97 basesExon 6: 49,476,476–49,477,039, 564 basesExon 7: 49,480,219–49,480,335, 117 basesExon 8: 49,480,947–49,481,116, 170 basesExon 9: 49,482,737–49,482,962, 226 basesExon 10: 49,483,464–49,483,563, 100 basesExon 11: 49,485,630–49,485,723, 94 basesExon 12: 49,488,290–49,488,630, 341 basesExon 13: 49,490,822–49,490,910, 89 basesExon 14: 49,491,732–49,495,003, 3,272 bases124681012145′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.2 kb of the gene's 50.7 kb; 2,124 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SETDB2 gene: SET domain bifurcated histone lysine methyltransferase 2. Retrieved 17 October 2026, from https://dantelabs.com/genes/setdb2

Vancouver

Dante Labs. SETDB2 gene: SET domain bifurcated histone lysine methyltransferase 2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/setdb2

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