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Gene

RTRAF

RNA transcription, translation and transport factor

Summary

Cytogenetic location
14q22.1
Coordinates
Chromosome 14: 51,989,546–52,010,694 (GRCh38)
Exons
8 exons across 21.1 kb
Protein
244 amino acids
Also known as
TSLIG4, CGI-99, RLLM1, CLE, CLE7, LCRP369, hCLE1
Previous symbols
C14orf166
MANE Select transcript
ENST00000261700.8NM_016039.3
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads RTRAF yet. The test sequences your whole genome, so your data includes it all the same.

How RTRAF is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 14, with a bracket where RTRAF sits. RTRAF and 6 genes near it on chromosome 14, from 51,500,120 to 52,500,119.Chromosome 1414q22.1p13p12p11.2p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.11q32.12q32.13q32.2q32.31q32.32q32.3351.6 Mb51.8 Mb52 Mb52.2 Mb52.4 MbFRMD6: 51,396,647–51,730,727, forward strandFRMD6GNG2: 51,826,195–51,979,342, forward strandGNG2RTRAF: 51,989,546–52,010,694, forward strandRTRAFNID2: 52,001,787–52,069,274, reverse strandNID2PTGDR: 52,267,667–52,276,724, forward strandPTGDRPTGER2: 52,314,226–52,329,822, forward strandPTGER2TXNDC16: 52,429,472–52,553,563, reverse strandTXNDC16Diagram of RTRAF: 8 exons on the forward strand of chromosome 14Exon 1: 51,989,546–51,989,700, 155 basesExon 2: 51,991,317–51,991,441, 125 basesExon 3: 51,993,723–51,993,822, 100 basesExon 4: 51,998,494–51,998,580, 87 basesExon 5: 51,999,708–51,999,796, 89 basesExon 6: 52,001,798–52,001,866, 69 basesExon 7: 52,004,194–52,004,242, 49 basesExon 8: 52,004,362–52,010,694, 6,333 bases123456785′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 7 kb of the gene's 21.1 kb; 735 of those bases code for the protein.

Sequencing RTRAF

2Easy

How hard RTRAF is to sequence with short reads, out of 100

Almost all of RTRAF's exons sit where short reads map cleanly.

What adds to it: the share of RTRAF's exons in each kind of hard region

  • Mappability0%
  • Homology0%
  • Shared with chrY0%
  • Reference coverage0%
  • Repeats2.3%
  • GC content5.5%

A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scored

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). RTRAF gene: RNA transcription, translation and transport factor. Retrieved 19 October 2026, from https://dantelabs.com/genes/rtraf

Vancouver

Dante Labs. RTRAF gene: RNA transcription, translation and transport factor [Internet]. [cited 19 October 2026]. Available from: https://dantelabs.com/genes/rtraf

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