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Gene

PRDM6

PR/SET domain 6

Summary

Cytogenetic location
5q23.2
Coordinates
Chromosome 5: 123,089,241–123,194,266 (GRCh38)
Exons
8 exons across 105 kb
Protein
595 amino acids
Also known as
PRISM, KMT8C
MANE Select transcript
ENST00000407847.5NM_001136239.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PRDM6 yet. The test sequences your whole genome, so your data includes it all the same.

How PRDM6 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 5, with a bracket where PRDM6 sits. PRDM6 and 5 genes near it on chromosome 5, from 122,641,754 to 123,641,753.Chromosome 55q23.2p15.33p15.32p15.31p15.2p15.1p14.3p14.2p14.1p13.3p13.2p13.1p12p11q11.1q11.2q12.1q12.2q12.3q13.1q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q31.1q31.2q31.3q32q33.1q33.2q33.3q34q35.1q35.2q35.3122.8 Mb123 Mb123.2 Mb123.4 Mb123.6 MbSNX2: 122,774,980–122,834,543, forward strandSNX2SNX24: 122,843,439–123,030,349, forward strandSNX24PPIC: 123,022,052–123,036,727, reverse strandPPICPRDM6: 123,089,241–123,194,266, forward strandPRDM6CEP120: 123,344,888–123,423,592, reverse strandCEP120CSNK1G3: 123,512,067–123,618,709, forward strandCSNK1G3Diagram of PRDM6: 8 exons on the forward strand of chromosome 5Exon 1: 123,089,241–123,089,519, 279 basesExon 2: 123,090,000–123,090,606, 607 basesExon 3: 123,099,654–123,099,961, 308 basesExon 4: 123,155,884–123,156,011, 128 basesExon 5: 123,159,514–123,159,638, 125 basesExon 6: 123,170,766–123,171,108, 343 basesExon 7: 123,180,147–123,180,323, 177 basesExon 8: 123,187,087–123,194,266, 7,180 bases1585′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 9.1 kb of the gene's 105 kb; 1,788 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.

Cite this page

APA

Dante Labs. (n.d.). PRDM6 gene: PR/SET domain 6. Retrieved 17 October 2026, from https://dantelabs.com/genes/prdm6

Vancouver

Dante Labs. PRDM6 gene: PR/SET domain 6 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/prdm6

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