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Gene

PDZK1

PDZ domain containing 1

Summary

Cytogenetic location
1q21.1
Coordinates
Chromosome 1: 145,670,985–145,707,368 (GRCh38)
Exons
9 exons across 36.4 kb
Protein
519 amino acids
Also known as
PDZD1, NHERF3, CAP70, CLAMP, NaPi-Cap1
MANE Select transcript
ENST00000417171.6NM_001201325.2
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads PDZK1 yet. The test sequences your whole genome, so your data includes it all the same.

How PDZK1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where PDZK1 sits. PDZK1 and 21 genes near it on chromosome 1, from 145,189,177 to 146,189,176.Chromosome 11q21.1p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q44145.2 Mb145.4 Mb145.6 Mb145.8 Mb146 MbPPIAL4D: 145,241,415–145,242,174, reverse strandPPIAL4DNBPF20: 145,289,900–145,425,624, reverse strandNBPF20GPHRA: 145,607,975–145,671,421, forward strandGPHRAPDZK1: 145,670,985–145,707,368, reverse strandPDZK1CD160: 145,719,443–145,740,760, forward strandCD160RNF115: 145,738,868–145,824,134, reverse strandRNF115POLR3C: 145,823,776–145,844,721, forward strandPOLR3CNUDT17: 145,845,603–145,848,954, forward strandNUDT17PIAS3: 145,848,521–145,859,836, reverse strandPIAS3ANKRD35: 145,865,390–145,886,088, reverse strandANKRD35ITGA10: 145,891,206–145,910,111, reverse strandITGA10PEX11B: 145,911,348–145,918,747, reverse strandPEX11B: 145,917,714–145,926,741, reverse strandRBM8A: 145,920,935–145,928,067, reverse strandRBM8A: 145,927,258–145,977,811, forward strandLIX1L: 145,933,423–145,958,055, reverse strandPOLR3GL: 145,957,026–145,978,849, forward strandANKRD34A: 145,959,441–145,964,575, reverse strandTXNIP: 145,992,435–145,996,580, reverse strandTXNIPHJV: 146,017,468–146,036,746, reverse strandHJVNBPF10: 146,064,711–146,229,000, reverse strandNBPF10NOTCH2NLA: 146,145,524–146,229,073, reverse strandNOTCH2NLADiagram of PDZK1: 9 exons on the reverse strand of chromosome 1Exon 9: 145,670,985–145,671,489, 505 basesExon 8: 145,672,730–145,673,020, 291 basesExon 7: 145,673,657–145,673,881, 225 basesExon 6: 145,678,449–145,678,645, 197 basesExon 5: 145,680,912–145,681,107, 196 basesExon 4: 145,682,500–145,682,636, 137 basesExon 3: 145,686,477–145,686,726, 250 basesExon 2: 145,687,812–145,688,023, 212 basesExon 1: 145,707,317–145,707,368, 52 bases9876543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.1 kb of the gene's 36.4 kb; 1,560 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PDZK1 gene: PDZ domain containing 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/pdzk1

Vancouver

Dante Labs. PDZK1 gene: PDZ domain containing 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/pdzk1

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