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Gene

LRRTM4

leucine rich repeat transmembrane neuronal 4

Summary

Cytogenetic location
2p12
Coordinates
Chromosome 2: 76,747,685–77,522,376 (GRCh38)
Exons
4 exons across 774.7 kb
Protein
590 amino acids
Also known as
FLJ12568
MANE Select transcript
ENST00000409884.6NM_001134745.3
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads LRRTM4 yet. The test sequences your whole genome, so your data includes it all the same.

How LRRTM4 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where LRRTM4 sits. LRRTM4 and 0 genes near it on chromosome 2, from 75,972,993 to 78,297,068.Chromosome 22p12p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.376 Mb76.5 Mb77 Mb77.5 Mb78 MbLRRTM4: 76,747,685–77,522,376, reverse strandLRRTM4Diagram of LRRTM4: 4 exons on the reverse strand of chromosome 2Exon 4: 76,747,685–76,748,916, 1,232 basesExon 3: 77,518,318–77,519,864, 1,547 basesExon 2: 77,521,668–77,521,818, 151 basesExon 1: 77,522,109–77,522,376, 268 bases415′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.2 kb of the gene's 774.7 kb; 1,773 of those bases code for the protein.

Sequencing LRRTM4

1Easy

How hard LRRTM4 is to sequence with short reads, out of 100

Almost all of LRRTM4's exons sit where short reads map cleanly.

What adds to it: the share of LRRTM4's exons in each kind of hard region

  • Mappability0%
  • Homology0%
  • Shared with chrY0%
  • Reference coverage0%
  • Repeats2.3%
  • GC content0%

A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scored

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). LRRTM4 gene: leucine rich repeat transmembrane neuronal 4. Retrieved 20 October 2026, from https://dantelabs.com/genes/lrrtm4

Vancouver

Dante Labs. LRRTM4 gene: leucine rich repeat transmembrane neuronal 4 [Internet]. [cited 20 October 2026]. Available from: https://dantelabs.com/genes/lrrtm4

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