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Gene

HLTF

helicase like transcription factor

Summary

Cytogenetic location
3q24
Coordinates
Chromosome 3: 149,030,127–149,086,533 (GRCh38)
Exons
25 exons across 56.4 kb
Protein
1,009 amino acids
Also known as
HIP116A, HLTF1, RNF80
Previous symbols
SNF2L3, SMARCA3
MANE Select transcript
ENST00000310053.10NM_003071.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads HLTF yet. The test sequences your whole genome, so your data includes it all the same.

How HLTF is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 3, with a bracket where HLTF sits. HLTF and 10 genes near it on chromosome 3, from 148,558,330 to 149,558,329.Chromosome 33q24p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q29148.6 Mb148.8 Mb149 Mb149.2 Mb149.4 MbAGTR1: 148,697,784–148,743,045, forward strandAGTR1CPB1: 148,791,102–148,860,187, forward strandCPB1CPA3: 148,865,278–148,898,572, forward strandCPA3GYG1: 148,991,332–149,031,775, forward strandGYG1HLTF: 149,030,127–149,086,533, reverse strandHLTFHPS3: 149,129,602–149,173,732, forward strandHPS3CP: 149,162,410–149,222,049, reverse strandCPTM4SF18: 149,318,498–149,334,414, reverse strandTM4SF18TM4SF1: 149,369,022–149,377,729, reverse strandTM4SF1TM4SF4: 149,473,937–149,503,394, forward strandTM4SF4WWTR1: 149,517,235–149,736,714, reverse strandWWTR1Diagram of HLTF: 25 exons on the reverse strand of chromosome 3Exon 25: 149,030,127–149,032,372, 2,246 basesExon 24: 149,034,918–149,034,998, 81 basesExon 23: 149,039,049–149,039,229, 181 basesExon 22: 149,039,581–149,039,693, 113 basesExon 21: 149,040,031–149,040,156, 126 basesExon 20: 149,041,490–149,041,668, 179 basesExon 19: 149,042,166–149,042,290, 125 basesExon 18: 149,046,080–149,046,259, 180 basesExon 17: 149,048,028–149,048,163, 136 basesExon 16: 149,048,863–149,049,001, 139 basesExon 15: 149,050,232–149,050,375, 144 basesExon 14: 149,055,303–149,055,400, 98 basesExon 13: 149,059,718–149,059,807, 90 basesExon 12: 149,060,643–149,060,687, 45 basesExon 11: 149,060,779–149,060,858, 80 basesExon 10: 149,063,431–149,063,524, 94 basesExon 9: 149,064,791–149,064,866, 76 basesExon 8: 149,068,240–149,068,335, 96 basesExon 7: 149,071,252–149,071,443, 192 basesExon 6: 149,071,583–149,071,657, 75 basesExon 5: 149,073,225–149,073,322, 98 basesExon 4: 149,074,215–149,074,348, 134 basesExon 3: 149,075,881–149,076,047, 167 basesExon 2: 149,084,682–149,084,889, 208 basesExon 1: 149,086,317–149,086,533, 217 bases252422201816141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.3 kb of the gene's 56.4 kb; 3,030 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). HLTF gene: helicase like transcription factor. Retrieved 17 October 2026, from https://dantelabs.com/genes/hltf

Vancouver

Dante Labs. HLTF gene: helicase like transcription factor [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/hltf

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