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Gene

CTCFL

CCCTC-binding factor like

Summary

Cytogenetic location
20q13.31
Coordinates
Chromosome 20: 57,497,166–57,525,140 (GRCh38)
Exons
11 exons across 28 kb
Protein
663 amino acids
Also known as
dJ579F20.2, BORIS, CT27
MANE Select transcript
ENST00000243914.8NM_001386993.1
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CTCFL yet. The test sequences your whole genome, so your data includes it all the same.

How CTCFL is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 20, with a bracket where CTCFL sits. CTCFL and 8 genes near it on chromosome 20, from 57,011,153 to 58,011,152.Chromosome 2020q13.31p13p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q12q13.11q13.12q13.13q13.2q13.31q13.32q13.3357.2 Mb57.4 Mb57.6 Mb57.8 Mb58 MbBMP7: 57,168,748–57,266,680, reverse strandBMP7SPO11: 57,329,755–57,343,994, forward strandSPO11RAE1: 57,351,218–57,380,114, forward strandRAE1RBM38: 57,391,389–57,409,333, forward strandRBM38HMGB1P1: 57,487,959–57,495,366, reverse strandHMGB1P1CTCFL: 57,497,166–57,525,140, reverse strandCTCFLPCK1: 57,546,220–57,570,667, forward strandPCK1ZBP1: 57,603,575–57,620,576, reverse strandZBP1PMEPA1: 57,648,392–57,711,536, reverse strandPMEPA1Diagram of CTCFL: 11 exons on the reverse strand of chromosome 20Exon 11: 57,497,166–57,498,701, 1,536 basesExon 10: 57,503,436–57,503,601, 166 basesExon 9: 57,508,606–57,508,788, 183 basesExon 8: 57,512,592–57,512,752, 161 basesExon 7: 57,514,592–57,514,741, 150 basesExon 6: 57,515,714–57,515,834, 121 basesExon 5: 57,518,758–57,518,891, 134 basesExon 4: 57,519,207–57,519,377, 171 basesExon 3: 57,523,068–57,523,278, 211 basesExon 2: 57,523,663–57,524,216, 554 basesExon 1: 57,525,028–57,525,140, 113 bases11109876543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.5 kb of the gene's 28 kb; 1,992 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CTCFL gene: CCCTC-binding factor like. Retrieved 16 October 2026, from https://dantelabs.com/genes/ctcfl

Vancouver

Dante Labs. CTCFL gene: CCCTC-binding factor like [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/ctcfl

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