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Gene

CNTLN

centlein

Summary

Cytogenetic location
9p22.2
Coordinates
Chromosome 9: 17,135,040–17,503,923 (GRCh38)
Exons
26 exons across 368.9 kb
Protein
1,406 amino acids
Also known as
FLJ20276, bA340N12.1, OTTHUMG00000019597
Previous symbols
C9orf101, C9orf39
MANE Select transcript
ENST00000380647.8NM_017738.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CNTLN yet. The test sequences your whole genome, so your data includes it all the same.

How CNTLN is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 9, with a bracket where CNTLN sits. CNTLN and 2 genes near it on chromosome 9, from 16,766,156 to 17,872,807.Chromosome 99p22.2p24.3p24.2p24.1p23p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q13q21.11q21.12q21.13q21.2q21.31q21.32q21.33q22.1q22.2q22.31q22.32q22.33q31.1q31.2q31.3q32q33.1q33.2q33.3q34.11q34.12q34.13q34.2q34.316.8 Mb17 Mb17.2 Mb17.4 Mb17.6 Mb17.8 MbBNC2: 16,409,503–16,871,942, reverse strandBNC2CNTLN: 17,135,040–17,503,923, forward strandCNTLNSH3GL2: 17,579,060–17,797,129, forward strandSH3GL2Diagram of CNTLN: 26 exons on the forward strand of chromosome 9Exon 1: 17,135,040–17,135,425, 386 basesExon 2: 17,143,288–17,143,376, 89 basesExon 3: 17,226,203–17,226,287, 85 basesExon 4: 17,235,658–17,235,792, 135 basesExon 5: 17,236,409–17,236,588, 180 basesExon 6: 17,273,733–17,273,866, 134 basesExon 7: 17,298,190–17,298,352, 163 basesExon 8: 17,309,058–17,309,252, 195 basesExon 9: 17,330,632–17,330,808, 177 basesExon 10: 17,332,605–17,332,730, 126 basesExon 11: 17,340,827–17,340,948, 122 basesExon 12: 17,342,325–17,342,444, 120 basesExon 13: 17,366,617–17,366,717, 101 basesExon 14: 17,388,162–17,388,253, 92 basesExon 15: 17,394,534–17,395,069, 536 basesExon 16: 17,409,293–17,409,473, 181 basesExon 17: 17,415,788–17,415,881, 94 basesExon 18: 17,415,966–17,416,189, 224 basesExon 19: 17,457,524–17,457,715, 192 basesExon 20: 17,462,916–17,463,013, 98 basesExon 21: 17,464,497–17,464,623, 127 basesExon 22: 17,465,981–17,466,118, 138 basesExon 23: 17,466,706–17,466,891, 186 basesExon 24: 17,484,295–17,484,480, 186 basesExon 25: 17,486,989–17,487,066, 78 basesExon 26: 17,502,551–17,503,923, 1,373 bases1510152025265′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.5 kb of the gene's 368.9 kb; 4,221 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CNTLN gene: centlein. Retrieved 17 October 2026, from https://dantelabs.com/genes/cntln

Vancouver

Dante Labs. CNTLN gene: centlein [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cntln

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