Gene
C11orf87
chromosome 11 open reading frame 87
- HGNC 33788↗(opens in a new tab)
- Ensembl gene ENSG00000185742↗(opens in a new tab)
- NCBI Gene 399947↗(opens in a new tab)
Summary
- Cytogenetic location
- 11q22.3
- Coordinates
- Chromosome 11: 109,422,190–109,429,167 (GRCh38)
- Exons
- 2 exons across 7 kb
- Protein
- 197 amino acids
- Also known as
- LOH11CR1A, LOC399947, NEURIM1
- MANE Select transcript
- ENST00000327419.7NM_207645.4
- Locus type
- Protein-coding
This page as data
Add .json to the page's address, or ask for application/json, to read it as JSON.
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How C11orf87 is laid out
- Coding sequence
- Untranslated region
- Intron
- Direction of transcription
Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.
Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).
Nearby genes from Ensembl release 116, on GRCh38.
Exons make up 5.9 kb of the gene's 7 kb; 594 of those bases code for the protein.
Sequencing C11orf87
2Low
How hard C11orf87 is to sequence with short reads, out of 100Each bar is the share of C11orf87's exon bases in that kind of difficult region. The score weighs them by how much each costs a short-read call: 0 when no base is in any, 100 when every base is in all of them.
- MappabilityStretches where 100 or 250 bp reads cannot be placed uniquely, so a call there may be missing or wrong. Weight 35%.0%
- HomologySegmental duplications: copies elsewhere in the genome, such as paralogues and pseudogenes, at 90% identity or more. Weight 30%.0%
- RepeatsTandem repeats and runs of one base, which reads slip on and may not span. Weight 15%.7.8%
- GC contentWindows under 25% or over 65% G and C, which library preparation covers thinly. Weight 10%.11%
- Reference coverageGaps in the reference assembly nearby, where there is no sequence for reads to align to. Weight 10%.0%
External links
Gene records
Transcript
Protein
Clinical
Where this comes from
- HGNC: the gene's symbol, name, other symbols and location.
- MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
- The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.
Cite this page
Dante Labs. (n.d.). C11orf87 gene: chromosome 11 open reading frame 87. Retrieved 17 October 2026, from https://dantelabs.com/genes/c11orf87
Dante Labs. C11orf87 gene: chromosome 11 open reading frame 87 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/c11orf87
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