--- title: "BRCA1 E699X (c.2095G>T, rs876658306) | Dante Labs" description: "ClinVar classifies BRCA1 E699X as Pathogenic (reviewed by expert panel). Where it sits in the genome, its predicted effect, and the Genome Test reports that look at it." url: "https://dantelabs.com/genes/brca1/variants/e699x" --- 1. [Genes](https://dantelabs.com/genes) 2. [BRCA1](https://dantelabs.com/genes/brca1) 3. BRCA1 E699X Variant # BRCA1 E699X NM_007294.4(BRCA1):c.2095G>T (p.Glu699Ter) Also known as - p.Glu699Ter - p.E699\* - rs876658306 * ClinVar classification Pathogenic * Review status 3 stars out of 4 reviewed by expert panel * Last evaluated 8 September 2016 * Expert panel Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) Data current to ClinVar release 2026-10-12 · Dante Labs data release 2026.10.16-c6eea6bf Facts last changed 16 October 2026 ## Summary E699X is a nonsense variant in BRCA1: it creates an early stop signal, so the protein the gene encodes is predicted to be cut short. ClinVar classifies it as pathogenic for breast-ovarian cancer, familial, susceptibility to, 1 (reviewed by expert panel). ## ClinVar classifications | Condition | Classification | Review status | Submissions | Last evaluated | | -------------------------------------------------------------------------------------------------------------------------------------------------------- | -------------- | ----------------------------------------- | ------------ | ---------------- | | breast-ovarian cancer, familial, susceptibility to, 1[ClinVar VCV000254405 (opens in a new tab)](https://www.ncbi.nlm.nih.gov/clinvar/variation/254405/) | Pathogenic | 3 stars out of 4 reviewed by expert panel | 1 submission | 8 September 2016 | Classifications as ClinVar records them in release 2026-10-12. ClinVar updates them as evidence is reviewed. ## Where it lies in BRCA1 E699X lies in exon 10 of the 23 in BRCA1's MANE Select transcript, NM_007294.4. [BRCA1 variants in exon 10 →](https://dantelabs.com/genes/brca1/variants?exon=10) [BRCA1's gene diagram →](https://dantelabs.com/genes/brca1#gene-structure) ## Molecular details | Gene | [BRCA1](https://dantelabs.com/genes/brca1) | | --------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------- | | Transcript | NM_007294.4 MANE Select | | Coding DNA change (HGVS c.) | c.2095G>T | | Protein change (HGVS p.) | p.Glu699Ter p.E699\* | | Predicted consequence | Nonsense (stop gained) [stop_gained (opens in a new tab)](https://purl.obolibrary.org/obo/SO_0001587) | | Predicted impact | High | | Position (GRCh38) | chr17:43093436 C>A | | Position (GRCh37) | chr17:41245453 C>A | | dbSNP ID | [rs876658306 (opens in a new tab)](https://www.ncbi.nlm.nih.gov/snp/rs876658306) | | ClinVar Variation ID | [VCV000254405 (opens in a new tab)](https://www.ncbi.nlm.nih.gov/clinvar/variation/254405/) | | ClinVar Allele ID | 249138 | | ClinGen Allele Registry ID | [CA10586650 (opens in a new tab)](https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_canonicalid?canonicalid=CA10586650) | | ClinVar name | NM_007294.4(BRCA1):c.2095G>T (p.Glu699Ter) | ## BRCA1 E699X in other databases - [ClinVar VCV000254405 (opens in a new tab)](https://www.ncbi.nlm.nih.gov/clinvar/variation/254405/) - [dbSNP rs876658306 (opens in a new tab)](https://www.ncbi.nlm.nih.gov/snp/rs876658306) - [ClinGen Allele Registry CA10586650 (opens in a new tab)](https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_canonicalid?canonicalid=CA10586650) - [gnomAD 17-43093436-C-A (opens in a new tab)](https://gnomad.broadinstitute.org/variant/17-43093436-C-A?dataset=gnomad_r4) - [Ensembl rs876658306 (opens in a new tab)](https://www.ensembl.org/Homo_sapiens/Variation/Explore?v=rs876658306) ## Reports that look at this variant (1) These Genome Test condition reports include E699X among the variants they look at. | Report | Conditions | Inheritance | | ------------------------------------------------------------------------------------------------------------------- | --------------------------------------------- | ------------------ | | [Hereditary Breast and Ovarian Cancer (BRCA1/2)](https://dantelabs.com/conditions/hereditary-breast-ovarian-cancer) | Hereditary Breast and Ovarian Cancer Syndrome | Autosomal dominant | | | BRCA1-related cancer predisposition | Autosomal dominant | ## Other variants in BRCA1 - [A92Ffs\*4 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a92ffs4) - [A134Qfs\*7 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a134qfs7) - [A302Cfs\*2 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a302cfs2) - [A302Lfs\*12 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a302lfs12) - [A322Kfs\*2 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a322kfs2) - [A322Lfs\*19 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a322lfs19) - [A407Sfs\*5 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a407sfs5) - [A433Pfs\*8 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a433pfs8) - [A469Qfs\*6 Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a469qfs6) - [A521X Pathogenic 3 stars out of 4](https://dantelabs.com/genes/brca1/variants/a521x) [All BRCA1 variants](https://dantelabs.com/genes/brca1/variants) ## Limitations This page describes publicly available information about a genetic variant. It is not a diagnosis, and it says nothing about whether you or anyone else carries this variant. Classifications come from ClinVar and change as new evidence is reviewed. A classification here may differ from the one in ClinVar today, or from the one a laboratory reports. Whole genome sequencing with short reads can miss or miscall some variants, particularly in repeated or highly similar stretches of DNA and in large insertions, deletions or rearrangements. If you have questions about a variant in your own results or in your family, talk to a genetic counsellor or your doctor. ## Sources & credits - Classifications from ClinVar (release 2026-10-12), National Center for Biotechnology Information. - Condition terms from the Mondo Disease Ontology (release 2026-10-06), used under CC BY 4.0. - Gene symbols and names from the HUGO Gene Nomenclature Committee (release 2026-10-16). - Allele identifiers from the ClinGen Allele Registry (release 2026-10-16-c4908f54). - Reference SNP identifiers from dbSNP (release b157), National Center for Biotechnology Information. - Gene–disease links from the Gene Curation Coalition, GenCC (release 2026-10-16). - Difficult regions from the Genome in a Bottle Consortium (release v3.6). - Transcripts from MANE (release v1.5), NCBI and EMBL-EBI. - Predicted consequences from mehari (release 0.11.0), with transcript models from cdot. - Built from Dante Labs data release 2026.10.16-c6eea6bf of 16 October 2026. ## Cite this page APA > Dante Labs. (16 October 2026). BRCA1 E699X (c.2095G>T, rs876658306) (Version 2026.10.16-c6eea6bf). Retrieved 16 October 2026, from https\://dantelabs.com/genes/brca1/variants/e699x Vancouver > Dante Labs. BRCA1 E699X (c.2095G>T, rs876658306) \[Internet]. Version 2026.10.16-c6eea6bf. 16 October 2026 \[cited 16 October 2026]. Available from: https\://dantelabs.com/genes/brca1/variants/e699x Download citation [RIS](https://dantelabs.com/genes/brca1/variants/e699x/cite.ris) [BibTeX](https://dantelabs.com/genes/brca1/variants/e699x/cite.bib) [CSL-JSON](https://dantelabs.com/genes/brca1/variants/e699x/cite.json) ## Read your whole genome From $449 Free shipping · Results in 6–8 weeks [Explore the Genome Test](https://dantelabs.com/whole-genome-sequencing)