{
  "url": "https://dantelabs.com/cs/genes/copa",
  "gene": {
    "slug": "copa",
    "symbol": "COPA",
    "name": "coat protein complex I subunit alpha",
    "hgnc": "HGNC:2230",
    "summary": null,
    "location": "1q23.2",
    "locusType": "gene with protein product",
    "aliases": [
      "HEP-COP",
      "alpha-COP"
    ],
    "previousSymbols": [],
    "ensemblId": "ENSG00000122218",
    "entrezId": 1314,
    "omim": [
      "601924"
    ],
    "uniprot": [
      "P53621"
    ],
    "model": {
      "build": "GRCh38",
      "release": "v1.5",
      "chrom": "1",
      "start": 160288594,
      "end": 160343250,
      "strand": "-",
      "ensemblTranscript": "ENST00000241704.8",
      "refseqTranscript": "NM_004371.4",
      "ensemblProtein": "ENSP00000241704.7",
      "refseqProtein": "NP_004362.2",
      "exons": [
        {
          "start": 160288594,
          "end": 160290216
        },
        {
          "start": 160290492,
          "end": 160290686
        },
        {
          "start": 160291335,
          "end": 160291496
        },
        {
          "start": 160291819,
          "end": 160291929
        },
        {
          "start": 160292012,
          "end": 160292198
        },
        {
          "start": 160292484,
          "end": 160292620
        },
        {
          "start": 160293166,
          "end": 160293234
        },
        {
          "start": 160293386,
          "end": 160293463
        },
        {
          "start": 160294484,
          "end": 160294593
        },
        {
          "start": 160294768,
          "end": 160294857
        },
        {
          "start": 160295736,
          "end": 160295859
        },
        {
          "start": 160296061,
          "end": 160296149
        },
        {
          "start": 160297343,
          "end": 160297438
        },
        {
          "start": 160297556,
          "end": 160297745
        },
        {
          "start": 160298845,
          "end": 160298991
        },
        {
          "start": 160299102,
          "end": 160299264
        },
        {
          "start": 160305433,
          "end": 160305571
        },
        {
          "start": 160305688,
          "end": 160305773
        },
        {
          "start": 160306354,
          "end": 160306493
        },
        {
          "start": 160307163,
          "end": 160307245
        },
        {
          "start": 160309101,
          "end": 160309176
        },
        {
          "start": 160310192,
          "end": 160310258
        },
        {
          "start": 160311868,
          "end": 160312018
        },
        {
          "start": 160313085,
          "end": 160313167
        },
        {
          "start": 160313990,
          "end": 160314125
        },
        {
          "start": 160323431,
          "end": 160323530
        },
        {
          "start": 160325543,
          "end": 160325652
        },
        {
          "start": 160332448,
          "end": 160332557
        },
        {
          "start": 160333603,
          "end": 160333679
        },
        {
          "start": 160335242,
          "end": 160335322
        },
        {
          "start": 160339909,
          "end": 160339982
        },
        {
          "start": 160340181,
          "end": 160340294
        },
        {
          "start": 160343131,
          "end": 160343250
        }
      ],
      "cds": {
        "start": 160290157,
        "end": 160343170
      }
    },
    "grch37": {
      "build": "GRCh37",
      "release": "87",
      "chrom": "1",
      "start": 160259063,
      "end": 160313190,
      "strand": "-"
    },
    "neighbourhood": {
      "release": "116",
      "start": 159815922,
      "end": 160815921,
      "genes": [
        {
          "symbol": "FCRL6",
          "ensemblId": "ENSG00000181036",
          "biotype": "protein_coding",
          "start": 159800503,
          "end": 159816262,
          "strand": "+",
          "slug": "fcrl6"
        },
        {
          "symbol": "SLAMF8",
          "ensemblId": "ENSG00000158714",
          "biotype": "protein_coding",
          "start": 159826682,
          "end": 159837492,
          "strand": "+",
          "slug": "slamf8"
        },
        {
          "symbol": "",
          "ensemblId": "ENSG00000256029",
          "biotype": "protein_coding",
          "start": 159834474,
          "end": 159873053,
          "strand": "-"
        },
        {
          "symbol": "VSIG8",
          "ensemblId": "ENSG00000243284",
          "biotype": "protein_coding",
          "start": 159854316,
          "end": 159862657,
          "strand": "-",
          "slug": "vsig8"
        },
        {
          "symbol": "CFAP45",
          "ensemblId": "ENSG00000213085",
          "biotype": "protein_coding",
          "start": 159872364,
          "end": 159900165,
          "strand": "-",
          "slug": "cfap45"
        },
        {
          "symbol": "TAGLN2",
          "ensemblId": "ENSG00000158710",
          "biotype": "protein_coding",
          "start": 159918106,
          "end": 159925546,
          "strand": "-",
          "slug": "tagln2"
        },
        {
          "symbol": "IGSF9",
          "ensemblId": "ENSG00000085552",
          "biotype": "protein_coding",
          "start": 159927039,
          "end": 159949468,
          "strand": "-",
          "slug": "igsf9"
        },
        {
          "symbol": "SLAMF9",
          "ensemblId": "ENSG00000162723",
          "biotype": "protein_coding",
          "start": 159951492,
          "end": 159954237,
          "strand": "-",
          "slug": "slamf9"
        },
        {
          "symbol": "KCNJ10",
          "ensemblId": "ENSG00000177807",
          "biotype": "protein_coding",
          "start": 159998651,
          "end": 160070483,
          "strand": "-",
          "slug": "kcnj10"
        },
        {
          "symbol": "PIGM",
          "ensemblId": "ENSG00000143315",
          "biotype": "protein_coding",
          "start": 160024953,
          "end": 160031990,
          "strand": "-",
          "slug": "pigm"
        },
        {
          "symbol": "KCNJ9",
          "ensemblId": "ENSG00000162728",
          "biotype": "protein_coding",
          "start": 160081501,
          "end": 160094277,
          "strand": "+",
          "slug": "kcnj9"
        },
        {
          "symbol": "IGSF8",
          "ensemblId": "ENSG00000162729",
          "biotype": "protein_coding",
          "start": 160091340,
          "end": 160101109,
          "strand": "-",
          "slug": "igsf8"
        },
        {
          "symbol": "ATP1A2",
          "ensemblId": "ENSG00000018625",
          "biotype": "protein_coding",
          "start": 160115755,
          "end": 160143605,
          "strand": "+",
          "slug": "atp1a2"
        },
        {
          "symbol": "ATP1A4",
          "ensemblId": "ENSG00000132681",
          "biotype": "protein_coding",
          "start": 160151586,
          "end": 160187593,
          "strand": "+",
          "slug": "atp1a4"
        },
        {
          "symbol": "CASQ1",
          "ensemblId": "ENSG00000143318",
          "biotype": "protein_coding",
          "start": 160190212,
          "end": 160201886,
          "strand": "+",
          "slug": "casq1"
        },
        {
          "symbol": "PEA15",
          "ensemblId": "ENSG00000162734",
          "biotype": "protein_coding",
          "start": 160205328,
          "end": 160220335,
          "strand": "+",
          "slug": "pea15"
        },
        {
          "symbol": "DCAF8",
          "ensemblId": "ENSG00000132716",
          "biotype": "protein_coding",
          "start": 160214840,
          "end": 160263388,
          "strand": "-",
          "slug": "dcaf8"
        },
        {
          "symbol": "",
          "ensemblId": "ENSG00000258465",
          "biotype": "protein_coding",
          "start": 160216800,
          "end": 160285130,
          "strand": "-"
        },
        {
          "symbol": "PEX19",
          "ensemblId": "ENSG00000162735",
          "biotype": "protein_coding",
          "start": 160266229,
          "end": 160286348,
          "strand": "-",
          "slug": "pex19"
        },
        {
          "symbol": "NCSTN",
          "ensemblId": "ENSG00000162736",
          "biotype": "protein_coding",
          "start": 160343294,
          "end": 160358957,
          "strand": "+",
          "slug": "ncstn"
        },
        {
          "symbol": "NHLH1",
          "ensemblId": "ENSG00000171786",
          "biotype": "protein_coding",
          "start": 160367071,
          "end": 160372846,
          "strand": "+",
          "slug": "nhlh1"
        },
        {
          "symbol": "VANGL2",
          "ensemblId": "ENSG00000162738",
          "biotype": "protein_coding",
          "start": 160400528,
          "end": 160428678,
          "strand": "+",
          "slug": "vangl2"
        },
        {
          "symbol": "SLAMF6",
          "ensemblId": "ENSG00000162739",
          "biotype": "protein_coding",
          "start": 160484817,
          "end": 160523273,
          "strand": "-",
          "slug": "slamf6"
        },
        {
          "symbol": "CD84",
          "ensemblId": "ENSG00000066294",
          "biotype": "protein_coding",
          "start": 160541095,
          "end": 160579544,
          "strand": "-",
          "slug": "cd84"
        },
        {
          "symbol": "SLAMF1",
          "ensemblId": "ENSG00000117090",
          "biotype": "protein_coding",
          "start": 160608100,
          "end": 160647056,
          "strand": "-",
          "slug": "slamf1"
        },
        {
          "symbol": "CD48",
          "ensemblId": "ENSG00000117091",
          "biotype": "protein_coding",
          "start": 160678746,
          "end": 160711831,
          "strand": "-",
          "slug": "cd48"
        },
        {
          "symbol": "SLAMF7",
          "ensemblId": "ENSG00000026751",
          "biotype": "protein_coding",
          "start": 160739057,
          "end": 160754821,
          "strand": "+",
          "slug": "slamf7"
        },
        {
          "symbol": "LY9",
          "ensemblId": "ENSG00000122224",
          "biotype": "protein_coding",
          "start": 160796071,
          "end": 160828601,
          "strand": "+",
          "slug": "ly9"
        }
      ],
      "truncated": false
    },
    "reports": [
      {
        "slug": "rare-monogenic-autoinflammatory-diseases",
        "name": "Rare Monogenic Autoinflammatory Diseases",
        "diseases": [
          {
            "mondoId": "MONDO:0957018",
            "name": "PTPN2-related autoinflammation and autoimmunity",
            "genes": 22,
            "inheritance": "autosomal-dominant",
            "description": "Early-onset inflammatory and autoimmune disease, including colitis and arthritis, caused by variants in PTPN2.",
            "management": null,
            "evidence": {
              "gencc": [
                "Labcorp Genetics (formerly Invitae)"
              ],
              "acmgSf": false,
              "inheritance": [
                "autosomal-dominant"
              ]
            },
            "sameAsReport": false,
            "broad": false
          }
        ],
        "url": "https://dantelabs.com/cs/conditions/rare-monogenic-autoinflammatory-diseases"
      },
      {
        "slug": "type-1-interferonopathies",
        "name": "Type I Interferonopathies",
        "diseases": [
          {
            "mondoId": "MONDO:0014629",
            "name": "COPA syndrome",
            "genes": 1,
            "inheritance": "autosomal-dominant",
            "description": "Lung disease with bleeding or interstitial changes, arthritis and kidney inflammation caused by variants in COPA.",
            "management": null,
            "evidence": {
              "gencc": [
                "Labcorp Genetics (formerly Invitae)"
              ],
              "acmgSf": false,
              "inheritance": [
                "autosomal-dominant"
              ]
            },
            "sameAsReport": false,
            "broad": false
          }
        ],
        "url": "https://dantelabs.com/cs/conditions/type-1-interferonopathies"
      }
    ],
    "pharmacogenomics": [],
    "traits": [],
    "phenotypes": [
      {
        "slug": "abnormal-pulmonary-interstitial-morphology",
        "name": "Abnormality in area between air sacs in lung",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "obligate",
        "url": "https://dantelabs.com/traits/abnormal-pulmonary-interstitial-morphology"
      },
      {
        "slug": "antinuclear-antibody-positivity",
        "name": "Antinuclear antibody positivity",
        "systems": [
          "abnormality-of-the-immune-system"
        ],
        "frequency": "frequent",
        "url": "https://dantelabs.com/traits/antinuclear-antibody-positivity"
      },
      {
        "slug": "arthritis",
        "name": "Arthritis",
        "systems": [
          "abnormality-of-the-musculoskeletal-system"
        ],
        "frequency": "very-frequent",
        "url": "https://dantelabs.com/traits/arthritis"
      },
      {
        "slug": "dyspnea",
        "name": "Breathing difficulty",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "occasional",
        "url": "https://dantelabs.com/traits/dyspnea"
      },
      {
        "slug": "cough",
        "name": "Cough",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "occasional",
        "url": "https://dantelabs.com/traits/cough"
      },
      {
        "slug": "crescentic-glomerulonephritis",
        "name": "Crescentic glomerulonephritis",
        "systems": [
          "abnormality-of-the-genitourinary-system",
          "abnormality-of-the-immune-system"
        ],
        "frequency": "frequent",
        "url": "https://dantelabs.com/traits/crescentic-glomerulonephritis"
      },
      {
        "slug": "decreased-dlco",
        "name": "Decreased DLCO",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "url": "https://dantelabs.com/traits/decreased-dlco"
      },
      {
        "slug": "elevated-circulating-c-reactive-protein-concentration",
        "name": "Elevated circulating C-reactive protein concentration",
        "systems": [
          "abnormality-of-metabolism-homeostasis"
        ],
        "url": "https://dantelabs.com/traits/elevated-circulating-c-reactive-protein-concentration"
      },
      {
        "slug": "hemosiderin-laden-macrophages-in-bronchoalveolar-fluid",
        "name": "Hemosiderin-laden macrophages in bronchoalveolar fluid",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "obligate",
        "url": "https://dantelabs.com/traits/hemosiderin-laden-macrophages-in-bronchoalveolar-fluid"
      },
      {
        "slug": "elevated-erythrocyte-sedimentation-rate",
        "name": "High ESR",
        "systems": [
          "abnormality-of-metabolism-homeostasis"
        ],
        "url": "https://dantelabs.com/traits/elevated-erythrocyte-sedimentation-rate"
      },
      {
        "slug": "tachypnea",
        "name": "Increased respiratory rate or depth of breathing",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "occasional",
        "url": "https://dantelabs.com/traits/tachypnea"
      },
      {
        "slug": "arthralgia",
        "name": "Joint pain",
        "systems": [
          "constitutional-symptom"
        ],
        "frequency": "occasional",
        "url": "https://dantelabs.com/traits/arthralgia"
      },
      {
        "slug": "mesangial-hypercellularity",
        "name": "Mesangial hypercellularity",
        "systems": [
          "abnormality-of-the-genitourinary-system"
        ],
        "frequency": "occasional",
        "url": "https://dantelabs.com/traits/mesangial-hypercellularity"
      },
      {
        "slug": "pulmonary-hemorrhage",
        "name": "Pulmonary hemorrhage",
        "systems": [
          "abnormality-of-blood-and-blood-forming-tissues",
          "abnormality-of-the-cardiovascular-system",
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "frequent",
        "url": "https://dantelabs.com/traits/pulmonary-hemorrhage"
      },
      {
        "slug": "restrictive-ventilatory-defect",
        "name": "Stiff lung or chest wall causing decreased lung volume",
        "systems": [
          "abnormality-of-the-respiratory-system"
        ],
        "frequency": "obligate",
        "url": "https://dantelabs.com/traits/restrictive-ventilatory-defect"
      }
    ],
    "related": [
      {
        "slug": "acp5",
        "symbol": "ACP5",
        "name": "acid phosphatase 5, tartrate resistant",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/acp5"
      },
      {
        "slug": "ada2",
        "symbol": "ADA2",
        "name": "adenosine deaminase 2",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/ada2"
      },
      {
        "slug": "adar",
        "symbol": "ADAR",
        "name": "adenosine deaminase RNA specific",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/adar"
      },
      {
        "slug": "ifih1",
        "symbol": "IFIH1",
        "name": "interferon induced with helicase C domain 1",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/ifih1"
      },
      {
        "slug": "pola1",
        "symbol": "POLA1",
        "name": "DNA polymerase alpha 1, catalytic subunit",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/pola1"
      },
      {
        "slug": "pomp",
        "symbol": "POMP",
        "name": "proteasome maturation protein",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/pomp"
      },
      {
        "slug": "psmb10",
        "symbol": "PSMB10",
        "name": "proteasome 20S subunit beta 10",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/psmb10"
      },
      {
        "slug": "psmb8",
        "symbol": "PSMB8",
        "name": "proteasome 20S subunit beta 8",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/psmb8"
      },
      {
        "slug": "psmb9",
        "symbol": "PSMB9",
        "name": "proteasome 20S subunit beta 9",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/psmb9"
      },
      {
        "slug": "ptpn2",
        "symbol": "PTPN2",
        "name": "protein tyrosine phosphatase non-receptor type 2",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/ptpn2"
      },
      {
        "slug": "rigi",
        "symbol": "RIGI",
        "name": "RNA sensor RIG-I",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/rigi"
      },
      {
        "slug": "rnaseh2a",
        "symbol": "RNASEH2A",
        "name": "ribonuclease H2 subunit A",
        "shared": 1,
        "url": "https://dantelabs.com/cs/genes/rnaseh2a"
      }
    ],
    "sources": {
      "bundleId": "2026.10.18-e609d43e",
      "panel": "2026-10-17",
      "acmgSf": "SF v3.2"
    },
    "locusKind": "proteinCoding"
  },
  "variants": {
    "total": 0,
    "url": null,
    "items": []
  }
}